Detailed information NTG1071902

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACI3L7_RS00855
• Genome accession: NZ_CP173387
• Coordinates: 208354..209223 (+)
• Length: 289 a.a.
• NCBI ID: WP_012128879.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain LB135
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 203354..214223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI3L7_RS00835 (ACI3L7_00835)	nadC	203721..204608 (+)	888	WP_012128875.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACI3L7_RS00840 (ACI3L7_00840)	pilA	204874..205338 (+)	465	WP_051118346.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
ACI3L7_RS00845 (ACI3L7_00845)	pilB	205338..207023 (+)	1686	WP_404970138.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACI3L7_RS00850 (ACI3L7_00850)	pilC	207058..208281 (+)	1224	WP_050905227.1	type II secretion system F family protein	Machinery gene
ACI3L7_RS00855 (ACI3L7_00855)	pilD	208354..209223 (+)	870	WP_012128879.1	A24 family peptidase	Machinery gene
ACI3L7_RS00860 (ACI3L7_00860)	coaE	209224..209838 (+)	615	WP_012128880.1	dephospho-CoA kinase	-
ACI3L7_RS00865 (ACI3L7_00865)	zapD	209866..210606 (+)	741	WP_012128881.1	cell division protein ZapD	-
ACI3L7_RS00870 (ACI3L7_00870)	yacG	210669..210863 (+)	195	WP_404970139.1	DNA gyrase inhibitor YacG	-
ACI3L7_RS00875 (ACI3L7_00875)	rplS	211379..211732 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
ACI3L7_RS00880 (ACI3L7_00880)	trmD	211774..212517 (-)	744	WP_005425529.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACI3L7_RS00885 (ACI3L7_00885)	rimM	212545..213093 (-)	549	WP_005534055.1	ribosome maturation factor RimM	-
ACI3L7_RS00890 (ACI3L7_00890)	rpsP	213121..213369 (-)	249	WP_005438039.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32503.75 Da
• Isoelectric Point: 7.5422

>NTDB_id=1071902 ACI3L7_RS00855 WP_012128879.1 208354..209223(+) (pilD) [Vibrio campbellii strain LB135]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCQAPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=1071902 ACI3L7_RS00855 WP_012128879.1 208354..209223(+) (pilD) [Vibrio campbellii strain LB135]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTAGTTATCTACCGTTTACCCAAGATCATGGAACTTGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCTAAAGAGACGCTGACGTTAAGCGTACCGCGCTCATCTTGTCAGCAATGCGGAACTCCCATTCGCATCCGA
GACAACATTCCGGTAATTAGCTGGCTATTACTGAAAGGCAAGTGCCACAACTGCCAAGCGCCCATCAGTGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
GGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTCCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCGGCATTGGGCGCTTGGTTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTCGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	98.616	100	0.986
pilD	Vibrio cholerae strain A1552	75.694	99.654	0.754
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	46.014	95.502	0.439