Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACI3L7_RS00840 | Genome accession | NZ_CP173387 |
| Coordinates | 204874..205338 (+) | Length | 154 a.a. |
| NCBI ID | WP_051118346.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain LB135 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 199874..210338
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACI3L7_RS00825 (ACI3L7_00825) | pdhR | 201905..202672 (-) | 768 | WP_005428674.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| ACI3L7_RS00830 (ACI3L7_00830) | ampD | 203077..203628 (-) | 552 | WP_404970137.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACI3L7_RS00835 (ACI3L7_00835) | nadC | 203721..204608 (+) | 888 | WP_012128875.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACI3L7_RS00840 (ACI3L7_00840) | pilA | 204874..205338 (+) | 465 | WP_051118346.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| ACI3L7_RS00845 (ACI3L7_00845) | pilB | 205338..207023 (+) | 1686 | WP_404970138.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACI3L7_RS00850 (ACI3L7_00850) | pilC | 207058..208281 (+) | 1224 | WP_050905227.1 | type II secretion system F family protein | Machinery gene |
| ACI3L7_RS00855 (ACI3L7_00855) | pilD | 208354..209223 (+) | 870 | WP_012128879.1 | A24 family peptidase | Machinery gene |
| ACI3L7_RS00860 (ACI3L7_00860) | coaE | 209224..209838 (+) | 615 | WP_012128880.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16227.63 Da Isoelectric Point: 8.8069
>NTDB_id=1071899 ACI3L7_RS00840 WP_051118346.1 204874..205338(+) (pilA) [Vibrio campbellii strain LB135]
MKTNKQKKQQGFTLIELMIVVAIIGILAAFAIPAYQDYTKKATMAEFPKIASSTKLAVELCAHEHAADAGAFKTKCHQTA
NGIPAAFTLNNLTVTPAAGAASGAISITVNAANDKGPIKQNEKYILTATYASNGVTWSSECKDATNAVQTSYCP
MKTNKQKKQQGFTLIELMIVVAIIGILAAFAIPAYQDYTKKATMAEFPKIASSTKLAVELCAHEHAADAGAFKTKCHQTA
NGIPAAFTLNNLTVTPAAGAASGAISITVNAANDKGPIKQNEKYILTATYASNGVTWSSECKDATNAVQTSYCP
Nucleotide
Download Length: 465 bp
>NTDB_id=1071899 ACI3L7_RS00840 WP_051118346.1 204874..205338(+) (pilA) [Vibrio campbellii strain LB135]
ATGAAAACGAATAAACAGAAGAAGCAGCAGGGTTTTACGCTGATTGAATTAATGATTGTGGTGGCGATTATTGGTATCTT
GGCTGCATTTGCAATCCCGGCTTATCAAGACTACACGAAGAAAGCAACAATGGCAGAGTTCCCTAAAATTGCATCTTCTA
CAAAACTAGCAGTTGAGCTTTGTGCTCATGAACACGCAGCAGATGCTGGGGCATTTAAGACTAAATGTCACCAAACGGCG
AATGGGATACCTGCTGCCTTCACCCTAAATAATCTAACAGTAACGCCAGCAGCTGGGGCAGCTTCGGGTGCCATTAGTAT
TACGGTAAATGCAGCAAACGACAAAGGTCCAATTAAGCAAAACGAAAAATACATTTTAACTGCAACGTATGCTTCCAATG
GAGTTACATGGTCCTCAGAATGTAAAGATGCGACCAACGCAGTACAAACCTCTTACTGCCCATAA
ATGAAAACGAATAAACAGAAGAAGCAGCAGGGTTTTACGCTGATTGAATTAATGATTGTGGTGGCGATTATTGGTATCTT
GGCTGCATTTGCAATCCCGGCTTATCAAGACTACACGAAGAAAGCAACAATGGCAGAGTTCCCTAAAATTGCATCTTCTA
CAAAACTAGCAGTTGAGCTTTGTGCTCATGAACACGCAGCAGATGCTGGGGCATTTAAGACTAAATGTCACCAAACGGCG
AATGGGATACCTGCTGCCTTCACCCTAAATAATCTAACAGTAACGCCAGCAGCTGGGGCAGCTTCGGGTGCCATTAGTAT
TACGGTAAATGCAGCAAACGACAAAGGTCCAATTAAGCAAAACGAAAAATACATTTTAACTGCAACGTATGCTTCCAATG
GAGTTACATGGTCCTCAGAATGTAAAGATGCGACCAACGCAGTACAAACCTCTTACTGCCCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio campbellii strain DS40M4 |
99.351 |
100 |
0.994 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
49.242 |
85.714 |
0.422 |
| pilA2 | Legionella pneumophila str. Paris |
48.485 |
85.714 |
0.416 |
| pilA/pilA1 | Eikenella corrodens VA1 |
38.125 |
100 |
0.396 |
| pilA | Haemophilus influenzae 86-028NP |
41.844 |
91.558 |
0.383 |
| pilA | Haemophilus influenzae Rd KW20 |
40.426 |
91.558 |
0.37 |
| comP | Acinetobacter baylyi ADP1 |
41.912 |
88.312 |
0.37 |