Detailed information NTG1070486

Bioinformatically predicted

Overview

• Name: ssbB
• Type: Machinery gene
• Locus tag: ACIQTD_RS01960
• Genome accession: NZ_CP173185
• Coordinates: 390946..391335 (+)
• Length: 129 a.a.
• NCBI ID: WP_270249955.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain MGEL24009
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	390946..394313	390946..391335	within	0

Gene organization within MGE regions

Location: 390946..394313

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIQTD_RS01960	ssbB	390946..391335 (+)	390	WP_270249955.1	single-stranded DNA-binding protein	Machinery gene
ACIQTD_RS01965	groES	391455..391739 (+)	285	WP_017864129.1	co-chaperone GroES	-
ACIQTD_RS01970	groL	391827..393455 (+)	1629	WP_003131585.1	chaperonin GroEL	-
ACIQTD_RS01975	-	393501..394313 (-)	813	WP_003131583.1	MBL fold metallo-hydrolase	-

Sequence

Protein

• Length: 129 a.a.
• Molecular weight: 14642.71 Da
• Isoelectric Point: 8.3705

>NTDB_id=1070486 ACIQTD_RS01960 WP_270249955.1 390946..391335(+) (ssbB) [Lactococcus lactis subsp. lactis strain MGEL24009]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAEALVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF

Nucleotide

• Length: 390 bp

>NTDB_id=1070486 ACIQTD_RS01960 WP_270249955.1 390946..391335(+) (ssbB) [Lactococcus lactis subsp. lactis strain MGEL24009]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAGCTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-95)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB	Lactococcus lactis subsp. cremoris KW2	89.922	100	0.899
ssbB	Streptococcus sobrinus strain NIDR 6715-7	60.769	100	0.612
ssbB/cilA	Streptococcus mitis NCTC 12261	56.154	100	0.566
ssbB/cilA	Streptococcus pneumoniae TIGR4	56.154	100	0.566
ssbB/cilA	Streptococcus pneumoniae Rx1	55.385	100	0.558
ssbB/cilA	Streptococcus pneumoniae D39	55.385	100	0.558
ssbB/cilA	Streptococcus pneumoniae R6	55.385	100	0.558
ssbB/cilA	Streptococcus mitis SK321	55.385	100	0.558
ssbA	Streptococcus mutans UA159	54.615	100	0.55
ssb	Latilactobacillus sakei subsp. sakei 23K	43.75	86.822	0.38
ssbA	Bacillus subtilis subsp. subtilis str. 168	44.762	81.395	0.364