Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ACHFB9_RS03520 | Genome accession | NZ_CP172404 |
| Coordinates | 744976..746208 (-) | Length | 410 a.a. |
| NCBI ID | WP_417069599.1 | Uniprot ID | - |
| Organism | Niveibacterium terrae strain 24SJ04S-2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 739976..751208
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACHFB9_RS03500 (ACHFB9_03500) | aspS | 741080..742864 (-) | 1785 | WP_417069595.1 | aspartate--tRNA ligase | - |
| ACHFB9_RS03505 (ACHFB9_03505) | - | 743103..743714 (-) | 612 | WP_417069596.1 | DUF502 domain-containing protein | - |
| ACHFB9_RS03510 (ACHFB9_03510) | - | 743729..743968 (-) | 240 | WP_417069597.1 | FmdB family zinc ribbon protein | - |
| ACHFB9_RS03515 (ACHFB9_03515) | pilD | 744070..744921 (-) | 852 | WP_417069598.1 | prepilin peptidase | Machinery gene |
| ACHFB9_RS03520 (ACHFB9_03520) | pilC | 744976..746208 (-) | 1233 | WP_417069599.1 | type II secretion system F family protein | Machinery gene |
| ACHFB9_RS03525 (ACHFB9_03525) | pilB | 746249..747964 (-) | 1716 | WP_417069600.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACHFB9_RS03530 (ACHFB9_03530) | - | 748063..748869 (-) | 807 | WP_417069601.1 | cytochrome C assembly family protein | - |
| ACHFB9_RS03535 (ACHFB9_03535) | ffh | 748917..750275 (+) | 1359 | WP_417069602.1 | signal recognition particle protein | - |
Sequence
Protein
Download Length: 410 a.a. Molecular weight: 44541.38 Da Isoelectric Point: 10.2826
>NTDB_id=1067411 ACHFB9_RS03520 WP_417069599.1 744976..746208(-) (pilC) [Niveibacterium terrae strain 24SJ04S-2]
MATARRTIKKPASSEETVFTWEGKDKNGKLIRGEMRAGSASLVQATLRRQGVHVLKVKKRSFGKGGKVTDKDISLFTRQL
STMLKSGVPLLQAFDIAIKGSSKPAMARLLNDIRTDVESGSGLAAAFRKHPVQFDALYSNLVGAGEQSGALDALLDRLAT
YKEKILAIKSKIKGALFYPVAVVSVAFGVVAVMMLFVIPQFKSVFTSFGAELPAPTLFVMGMSDLFLAYWWAIFGVIIGT
IVGLSYAYKRSPQMQFTMDRLILQFPVIGDIMRKSAIARWTRTLSTMFAAGVPLVEALDSVGGAAGNRVYQLATKQIQNE
VSTGTNLTISMQNANVFPMMVLQMVSIGEESGQLDSMLGKVADFFEREVDDSVEALSQLLEPLIIVFLGTIIGGLVVAMY
LPIFKLGQVV
MATARRTIKKPASSEETVFTWEGKDKNGKLIRGEMRAGSASLVQATLRRQGVHVLKVKKRSFGKGGKVTDKDISLFTRQL
STMLKSGVPLLQAFDIAIKGSSKPAMARLLNDIRTDVESGSGLAAAFRKHPVQFDALYSNLVGAGEQSGALDALLDRLAT
YKEKILAIKSKIKGALFYPVAVVSVAFGVVAVMMLFVIPQFKSVFTSFGAELPAPTLFVMGMSDLFLAYWWAIFGVIIGT
IVGLSYAYKRSPQMQFTMDRLILQFPVIGDIMRKSAIARWTRTLSTMFAAGVPLVEALDSVGGAAGNRVYQLATKQIQNE
VSTGTNLTISMQNANVFPMMVLQMVSIGEESGQLDSMLGKVADFFEREVDDSVEALSQLLEPLIIVFLGTIIGGLVVAMY
LPIFKLGQVV
Nucleotide
Download Length: 1233 bp
>NTDB_id=1067411 ACHFB9_RS03520 WP_417069599.1 744976..746208(-) (pilC) [Niveibacterium terrae strain 24SJ04S-2]
ATGGCCACAGCGCGCAGAACGATAAAAAAACCCGCCTCCAGCGAAGAGACCGTCTTCACCTGGGAAGGCAAGGACAAGAA
CGGCAAGCTGATCCGGGGCGAAATGCGCGCCGGCAGCGCCTCCCTGGTTCAGGCGACCTTGCGGCGTCAAGGCGTCCACG
TCCTCAAGGTCAAGAAGCGCAGCTTTGGCAAGGGGGGCAAGGTCACCGACAAGGACATCTCGCTCTTCACGCGCCAGCTC
TCGACGATGCTCAAGTCCGGCGTTCCCTTGCTCCAGGCCTTCGATATCGCGATCAAGGGCTCGTCCAAGCCGGCGATGGC
CCGCCTGCTCAACGACATCCGCACCGATGTCGAGTCGGGCAGCGGCCTCGCGGCGGCCTTCCGCAAGCATCCGGTCCAGT
TCGATGCGCTGTACTCGAACCTGGTCGGGGCCGGTGAGCAGTCCGGTGCGCTCGACGCACTGCTCGACCGGCTGGCGACC
TACAAGGAAAAAATTCTCGCGATCAAGAGCAAGATCAAGGGGGCTCTTTTTTATCCGGTCGCGGTCGTCTCGGTCGCCTT
TGGCGTCGTCGCGGTGATGATGCTGTTCGTGATCCCGCAGTTCAAATCGGTGTTCACGAGCTTTGGCGCGGAACTGCCCG
CACCAACCCTGTTCGTGATGGGGATGTCGGACCTCTTCCTCGCCTACTGGTGGGCGATCTTCGGCGTGATCATCGGCACG
ATTGTCGGCTTGAGTTATGCATACAAGCGATCCCCACAGATGCAGTTCACGATGGACCGCCTGATCCTGCAGTTCCCGGT
GATCGGCGACATCATGCGCAAGTCGGCGATCGCGCGCTGGACGCGAACCCTGTCCACGATGTTCGCCGCCGGCGTGCCCC
TGGTCGAAGCGCTCGATTCGGTCGGCGGAGCCGCCGGTAACCGGGTCTATCAACTCGCGACGAAACAGATCCAGAACGAA
GTGAGCACCGGCACCAATCTGACGATCTCGATGCAGAACGCTAACGTTTTCCCGATGATGGTTCTGCAGATGGTGTCGAT
CGGTGAAGAGTCCGGCCAGCTCGACTCGATGCTGGGCAAGGTCGCCGATTTCTTCGAGCGGGAAGTTGACGATTCGGTCG
AAGCACTCTCTCAGCTGCTCGAACCCTTGATCATCGTCTTCCTCGGCACGATCATCGGCGGCCTCGTCGTCGCGATGTAT
CTGCCGATCTTCAAACTCGGGCAGGTCGTCTGA
ATGGCCACAGCGCGCAGAACGATAAAAAAACCCGCCTCCAGCGAAGAGACCGTCTTCACCTGGGAAGGCAAGGACAAGAA
CGGCAAGCTGATCCGGGGCGAAATGCGCGCCGGCAGCGCCTCCCTGGTTCAGGCGACCTTGCGGCGTCAAGGCGTCCACG
TCCTCAAGGTCAAGAAGCGCAGCTTTGGCAAGGGGGGCAAGGTCACCGACAAGGACATCTCGCTCTTCACGCGCCAGCTC
TCGACGATGCTCAAGTCCGGCGTTCCCTTGCTCCAGGCCTTCGATATCGCGATCAAGGGCTCGTCCAAGCCGGCGATGGC
CCGCCTGCTCAACGACATCCGCACCGATGTCGAGTCGGGCAGCGGCCTCGCGGCGGCCTTCCGCAAGCATCCGGTCCAGT
TCGATGCGCTGTACTCGAACCTGGTCGGGGCCGGTGAGCAGTCCGGTGCGCTCGACGCACTGCTCGACCGGCTGGCGACC
TACAAGGAAAAAATTCTCGCGATCAAGAGCAAGATCAAGGGGGCTCTTTTTTATCCGGTCGCGGTCGTCTCGGTCGCCTT
TGGCGTCGTCGCGGTGATGATGCTGTTCGTGATCCCGCAGTTCAAATCGGTGTTCACGAGCTTTGGCGCGGAACTGCCCG
CACCAACCCTGTTCGTGATGGGGATGTCGGACCTCTTCCTCGCCTACTGGTGGGCGATCTTCGGCGTGATCATCGGCACG
ATTGTCGGCTTGAGTTATGCATACAAGCGATCCCCACAGATGCAGTTCACGATGGACCGCCTGATCCTGCAGTTCCCGGT
GATCGGCGACATCATGCGCAAGTCGGCGATCGCGCGCTGGACGCGAACCCTGTCCACGATGTTCGCCGCCGGCGTGCCCC
TGGTCGAAGCGCTCGATTCGGTCGGCGGAGCCGCCGGTAACCGGGTCTATCAACTCGCGACGAAACAGATCCAGAACGAA
GTGAGCACCGGCACCAATCTGACGATCTCGATGCAGAACGCTAACGTTTTCCCGATGATGGTTCTGCAGATGGTGTCGAT
CGGTGAAGAGTCCGGCCAGCTCGACTCGATGCTGGGCAAGGTCGCCGATTTCTTCGAGCGGGAAGTTGACGATTCGGTCG
AAGCACTCTCTCAGCTGCTCGAACCCTTGATCATCGTCTTCCTCGGCACGATCATCGGCGGCCTCGTCGTCGCGATGTAT
CTGCCGATCTTCAAACTCGGGCAGGTCGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
51.88 |
97.317 |
0.505 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.273 |
96.585 |
0.505 |
| pilG | Neisseria gonorrhoeae MS11 |
49.373 |
97.317 |
0.48 |
| pilG | Neisseria meningitidis 44/76-A |
48.872 |
97.317 |
0.476 |
| pilC | Acinetobacter baylyi ADP1 |
47.739 |
97.073 |
0.463 |
| pilC | Acinetobacter baumannii D1279779 |
47.859 |
96.829 |
0.463 |
| pilC | Vibrio cholerae strain A1552 |
44.697 |
96.585 |
0.432 |
| pilC | Vibrio campbellii strain DS40M4 |
41.895 |
97.805 |
0.41 |
| pilC | Thermus thermophilus HB27 |
38.889 |
100 |
0.393 |