Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACHFB9_RS03515 Genome accession   NZ_CP172404
Coordinates   744070..744921 (-) Length   283 a.a.
NCBI ID   WP_417069598.1    Uniprot ID   -
Organism   Niveibacterium terrae strain 24SJ04S-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 739070..749921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFB9_RS03495 (ACHFB9_03495) - 739335..740963 (-) 1629 WP_417069594.1 response regulator -
  ACHFB9_RS03500 (ACHFB9_03500) aspS 741080..742864 (-) 1785 WP_417069595.1 aspartate--tRNA ligase -
  ACHFB9_RS03505 (ACHFB9_03505) - 743103..743714 (-) 612 WP_417069596.1 DUF502 domain-containing protein -
  ACHFB9_RS03510 (ACHFB9_03510) - 743729..743968 (-) 240 WP_417069597.1 FmdB family zinc ribbon protein -
  ACHFB9_RS03515 (ACHFB9_03515) pilD 744070..744921 (-) 852 WP_417069598.1 prepilin peptidase Machinery gene
  ACHFB9_RS03520 (ACHFB9_03520) pilC 744976..746208 (-) 1233 WP_417069599.1 type II secretion system F family protein Machinery gene
  ACHFB9_RS03525 (ACHFB9_03525) pilB 746249..747964 (-) 1716 WP_417069600.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACHFB9_RS03530 (ACHFB9_03530) - 748063..748869 (-) 807 WP_417069601.1 cytochrome C assembly family protein -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 30401.90 Da        Isoelectric Point: 7.6644

>NTDB_id=1067410 ACHFB9_RS03515 WP_417069598.1 744070..744921(-) (pilD) [Niveibacterium terrae strain 24SJ04S-2]
MTELLTQPLLFVVASSLLGLCIGSFLNVVIHRLPKIMELEWQAQAAEIRGEAAPEHEAISLSRPRSRCPHCGSPIASWQN
IPLISYLALRGRCAHCKAPISIRYPIVELAGGILAGYSAWHFGPGIQAGAAMVFCWAMLALTFIDLDTQLLPDTITQPLL
WLGLLLNLSANFTDLPSAIIGATAGYLALWTVYWVFKLATGKEGMGFGDFKLLAAIGGWLGWKLLPFVVLASSAIGALVG
IALILFARHGRNTPIPFGPYLAGAGIAALFWGQTLTEAYLSGF

Nucleotide


Download         Length: 852 bp        

>NTDB_id=1067410 ACHFB9_RS03515 WP_417069598.1 744070..744921(-) (pilD) [Niveibacterium terrae strain 24SJ04S-2]
ATGACTGAACTCCTGACCCAGCCCCTGCTCTTCGTCGTCGCCTCCAGCCTGCTCGGGCTGTGCATCGGCAGCTTCCTGAA
TGTCGTGATTCACCGCCTGCCCAAGATCATGGAACTCGAATGGCAGGCCCAGGCCGCCGAGATCCGCGGCGAAGCGGCGC
CCGAGCACGAGGCGATCAGCCTCTCCCGCCCCCGCTCGCGCTGCCCGCACTGTGGCAGCCCAATTGCAAGCTGGCAGAAC
ATCCCGCTGATCTCCTATCTCGCGCTGCGCGGCCGCTGCGCCCATTGCAAGGCGCCGATCAGCATTCGCTACCCGATCGT
CGAACTCGCCGGAGGGATCCTGGCCGGCTATTCGGCCTGGCACTTCGGCCCCGGAATCCAGGCCGGAGCCGCAATGGTCT
TCTGCTGGGCGATGCTGGCCCTGACCTTCATCGATCTGGACACCCAACTGCTGCCCGACACGATCACCCAGCCCCTGCTG
TGGCTGGGTCTGCTGCTGAACCTGTCGGCGAACTTCACGGATCTGCCTTCGGCGATCATCGGTGCGACCGCCGGATATCT
CGCTCTGTGGACCGTGTATTGGGTTTTCAAACTGGCGACCGGCAAGGAAGGCATGGGTTTTGGCGACTTCAAGCTGCTCG
CCGCGATCGGCGGATGGTTGGGCTGGAAGTTGCTGCCCTTCGTGGTCCTCGCCTCGTCGGCGATCGGCGCGCTGGTCGGC
ATCGCACTGATCCTCTTCGCCCGCCACGGACGCAACACCCCCATCCCCTTCGGCCCCTACCTCGCCGGAGCGGGAATCGC
CGCGCTGTTCTGGGGACAGACCCTGACCGAAGCCTATCTTTCGGGCTTCTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(132-241)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.069

97.88

0.519
  pilD Vibrio campbellii strain DS40M4

51.079

98.233

0.502
  pilD Acinetobacter nosocomialis M2

51.103

96.113

0.491
  pilD Acinetobacter baumannii D1279779

50.735

96.113

0.488
  pilD Neisseria gonorrhoeae MS11

45.693

94.346

0.431

Multiple sequence alignment