Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACH105_RS15845 Genome accession   NZ_CP172234
Coordinates   3369675..3370895 (-) Length   406 a.a.
NCBI ID   WP_061340859.1    Uniprot ID   -
Organism   Stutzerimonas balearica strain Y11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3364675..3375895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH105_RS15810 (ACH105_15810) petA 3365160..3365753 (-) 594 WP_041104007.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  ACH105_RS15815 (ACH105_15815) rpsI 3366007..3366399 (-) 393 WP_041104005.1 30S ribosomal protein S9 -
  ACH105_RS15820 (ACH105_15820) rplM 3366414..3366842 (-) 429 WP_041104003.1 50S ribosomal protein L13 -
  ACH105_RS15825 (ACH105_15825) - 3367209..3367919 (+) 711 WP_200290958.1 energy-coupling factor ABC transporter permease -
  ACH105_RS15830 (ACH105_15830) yacG 3367913..3368110 (-) 198 WP_074519929.1 DNA gyrase inhibitor YacG -
  ACH105_RS15835 (ACH105_15835) coaE 3368107..3368715 (-) 609 WP_312380414.1 dephospho-CoA kinase -
  ACH105_RS15840 (ACH105_15840) pilD 3368809..3369678 (-) 870 WP_395763935.1 prepilin peptidase Machinery gene
  ACH105_RS15845 (ACH105_15845) pilC 3369675..3370895 (-) 1221 WP_061340859.1 type II secretion system F family protein Machinery gene
  ACH105_RS15850 (ACH105_15850) pilB 3370898..3372601 (-) 1704 WP_395763936.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACH105_RS15855 (ACH105_15855) pilV 3372970..3373155 (+) 186 WP_272890074.1 type IV pilin protein Machinery gene
  ACH105_RS15860 (ACH105_15860) - 3373175..3373642 (+) 468 WP_145996470.1 hypothetical protein -
  ACH105_RS15865 (ACH105_15865) - 3374275..3374997 (+) 723 WP_395763937.1 hypothetical protein -
  ACH105_RS15870 (ACH105_15870) - 3374999..3375838 (+) 840 WP_395764862.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44239.07 Da        Isoelectric Point: 9.6834

>NTDB_id=1065785 ACH105_RS15845 WP_061340859.1 3369675..3370895(-) (pilC) [Stutzerimonas balearica strain Y11]
MAEKALKTSVFTWEGTDRKGGKVKGELAGQSPALVKAQLRKQGINPLKVRKKAVSLFGSGKKIKPMDIALFTRQMATMMK
AGVPLLQAFDIIGEGFDNPNMRKMVDEVKQEVAAGNSFAGSLRKKPQYFDDLYCNLVESGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAVIVSAILLIKVVPQFESVFEGFGAELPAFTQMVVGLSRWLQEWWYLVLFAAFIAALVFK
QAYQKSEKFRDGLDRAMLKTPIVGDIVYKSVVARYARTLATTFAAGVPLVDALESVEGATGNVVFRRAVAKIRADVSAGV
QLNFSMRTTGVFPTMAVQMAAIGEEAGSLDEMLDKLASFYEAEVDNMVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1065785 ACH105_RS15845 WP_061340859.1 3369675..3370895(-) (pilC) [Stutzerimonas balearica strain Y11]
ATGGCGGAAAAAGCGTTGAAAACCAGCGTGTTCACCTGGGAAGGAACCGACAGGAAAGGCGGCAAGGTCAAGGGTGAGCT
CGCTGGGCAAAGCCCGGCTTTGGTCAAGGCGCAACTGCGTAAGCAAGGCATCAATCCGCTCAAGGTTCGCAAGAAAGCGG
TGTCCCTGTTCGGCTCCGGTAAAAAGATCAAGCCGATGGACATCGCTCTGTTCACTCGGCAAATGGCGACCATGATGAAG
GCCGGCGTGCCGCTGCTGCAGGCTTTCGACATCATTGGCGAGGGCTTCGACAACCCCAACATGCGCAAGATGGTCGATGA
GGTGAAGCAGGAAGTCGCTGCTGGTAACAGCTTCGCTGGTTCGCTGCGCAAGAAGCCGCAGTATTTCGACGATCTGTATT
GCAACCTGGTCGAGTCCGGGGAGCAATCGGGTGCCTTGGAGACGCTGCTGGATCGCGTGGCGACCTACAAGGAAAAAACC
GAAGCGCTGAAGGCGAAGATCAAAAAGGCGATGACCTATCCAATCGCGGTAATCGTCGTGGCGGTCATTGTGTCGGCGAT
CCTGCTGATCAAGGTCGTTCCGCAGTTCGAGAGCGTCTTCGAGGGTTTTGGTGCTGAGTTGCCGGCCTTTACCCAGATGG
TGGTCGGGCTGTCGCGCTGGCTGCAGGAGTGGTGGTATCTGGTTCTGTTCGCTGCCTTCATCGCGGCGCTGGTCTTCAAG
CAGGCATACCAGAAGTCGGAAAAATTCCGGGACGGATTGGATCGGGCGATGCTGAAAACGCCGATCGTAGGCGACATCGT
ATATAAGTCGGTAGTCGCTCGTTATGCGCGGACCCTTGCTACGACCTTTGCAGCGGGCGTTCCGCTGGTCGATGCGCTGG
AGTCGGTGGAGGGGGCGACGGGAAACGTGGTATTTCGGCGCGCCGTGGCAAAGATCCGCGCGGATGTCTCGGCAGGTGTG
CAGCTCAATTTTTCCATGCGCACCACGGGGGTATTCCCAACGATGGCGGTACAAATGGCTGCCATTGGTGAGGAGGCGGG
GTCGCTCGATGAAATGCTCGACAAGCTGGCCAGCTTCTATGAGGCGGAAGTCGACAACATGGTAGACAACCTGACCACGC
TAATGGAGCCGATGATCATGGCTGTTCTTGGGGTCCTGGTTGGCGGCCTGATCATTGCCATGTATCTGCCGATTTTCCAG
CTAGGTTCAGTCGTCGGATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

81.235

99.754

0.81
  pilC Acinetobacter baylyi ADP1

61.823

100

0.618
  pilC Acinetobacter baumannii D1279779

60.741

99.754

0.606
  pilC Legionella pneumophila strain ERS1305867

52.02

97.537

0.507
  pilG Neisseria gonorrhoeae MS11

45.274

99.015

0.448
  pilG Neisseria meningitidis 44/76-A

45.274

99.015

0.448
  pilC Vibrio cholerae strain A1552

42.365

100

0.424
  pilC Vibrio campbellii strain DS40M4

41.96

98.03

0.411

Multiple sequence alignment