Detailed information NTG1065784

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACH105_RS15840
• Genome accession: NZ_CP172234
• Coordinates: 3368809..3369678 (-)
• Length: 289 a.a.
• NCBI ID: WP_395763935.1
• Uniprot ID: -
• Organism: Stutzerimonas balearica strain Y11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3363809..3374678

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACH105_RS15805 (ACH105_15805)	-	3363949..3365160 (-)	1212	WP_041104009.1	cytochrome bc complex cytochrome b subunit	-
ACH105_RS15810 (ACH105_15810)	petA	3365160..3365753 (-)	594	WP_041104007.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-
ACH105_RS15815 (ACH105_15815)	rpsI	3366007..3366399 (-)	393	WP_041104005.1	30S ribosomal protein S9	-
ACH105_RS15820 (ACH105_15820)	rplM	3366414..3366842 (-)	429	WP_041104003.1	50S ribosomal protein L13	-
ACH105_RS15825 (ACH105_15825)	-	3367209..3367919 (+)	711	WP_200290958.1	energy-coupling factor ABC transporter permease	-
ACH105_RS15830 (ACH105_15830)	yacG	3367913..3368110 (-)	198	WP_074519929.1	DNA gyrase inhibitor YacG	-
ACH105_RS15835 (ACH105_15835)	coaE	3368107..3368715 (-)	609	WP_312380414.1	dephospho-CoA kinase	-
ACH105_RS15840 (ACH105_15840)	pilD	3368809..3369678 (-)	870	WP_395763935.1	prepilin peptidase	Machinery gene
ACH105_RS15845 (ACH105_15845)	pilC	3369675..3370895 (-)	1221	WP_061340859.1	type II secretion system F family protein	Machinery gene
ACH105_RS15850 (ACH105_15850)	pilB	3370898..3372601 (-)	1704	WP_395763936.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACH105_RS15855 (ACH105_15855)	pilV	3372970..3373155 (+)	186	WP_272890074.1	type IV pilin protein	Machinery gene
ACH105_RS15860 (ACH105_15860)	-	3373175..3373642 (+)	468	WP_145996470.1	hypothetical protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31854.72 Da
• Isoelectric Point: 7.6627

>NTDB_id=1065784 ACH105_RS15840 WP_395763935.1 3368809..3369678(-) (pilD) [Stutzerimonas balearica strain Y11]
MTAMSYLASHELAFVLSAALLGLLVGSFLNVLIYRLPVMMQREWREQAREYLSLEPEPVGPRFNLLLPASSCPHCGHSIR
AWENVPLVSWVLLRGRCSACRTGISARYPLVELACALLSGFTAWHFGFTWQAGAILLLGWGLLAMSMIDIDHQLLPDSLV
LPLLWFGLICNHFGLFVALGDALWGAVFGYLSLWAVYWLFKLVTGKEGMGYGDFKLLAMIGAWGGWQVLPLTILLSSLVG
AVIGTISLRWRNAAAGTPIPFGPYLAIAGWIALVWGQQITDRYLQLAGF

Nucleotide

• Length: 870 bp

>NTDB_id=1065784 ACH105_RS15840 WP_395763935.1 3368809..3369678(-) (pilD) [Stutzerimonas balearica strain Y11]
ATGACTGCGATGAGCTATCTGGCCAGCCACGAGCTGGCCTTTGTTTTGTCTGCGGCTTTGCTTGGATTGCTGGTTGGCAG
CTTTCTCAATGTGCTGATTTATCGGCTGCCGGTGATGATGCAGCGGGAATGGCGCGAGCAGGCGAGGGAGTACCTTTCGC
TCGAGCCTGAGCCTGTCGGGCCGCGATTCAACCTTTTGCTGCCTGCTTCTTCCTGTCCGCACTGTGGCCACTCTATTCGT
GCCTGGGAGAACGTCCCTCTGGTGAGCTGGGTGCTGCTGCGGGGGCGCTGTTCGGCATGTCGAACAGGTATCAGTGCCCG
TTATCCGCTGGTGGAGCTGGCCTGTGCGCTCCTTTCGGGGTTCACGGCCTGGCACTTCGGCTTCACCTGGCAAGCCGGGG
CGATCCTGCTGTTGGGCTGGGGGCTGCTGGCCATGAGCATGATCGATATCGATCACCAATTGCTGCCCGACTCGCTCGTG
CTGCCTCTTCTCTGGTTCGGCCTGATCTGCAACCATTTCGGCCTATTCGTTGCGCTCGGCGATGCGCTTTGGGGAGCTGT
CTTCGGCTACCTCAGCCTGTGGGCGGTGTACTGGCTATTCAAGCTCGTCACTGGCAAGGAAGGCATGGGCTACGGTGACT
TCAAGCTTCTTGCGATGATAGGGGCGTGGGGGGGATGGCAGGTGCTGCCGCTAACCATCCTCCTGTCATCGCTGGTCGGC
GCCGTAATCGGCACGATTTCACTGCGATGGCGGAATGCGGCTGCCGGCACGCCTATCCCGTTCGGCCCGTACCTGGCGAT
TGCCGGCTGGATCGCGCTGGTGTGGGGGCAGCAGATCACCGATCGCTATCTGCAGCTTGCCGGCTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.945	94.464	0.519
pilD	Vibrio campbellii strain DS40M4	53.48	94.464	0.505
pilD	Acinetobacter baumannii D1279779	48.763	97.924	0.478
pilD	Acinetobacter nosocomialis M2	48.763	97.924	0.478
pilD	Neisseria gonorrhoeae MS11	50.19	91.003	0.457