Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACHMW6_RS04615 Genome accession   NZ_CP171977
Coordinates   849248..850459 (-) Length   403 a.a.
NCBI ID   WP_395405948.1    Uniprot ID   -
Organism   Pseudoduganella sp. UC29_106     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 844248..855459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMW6_RS04585 (ACHMW6_04575) - 845315..846187 (+) 873 WP_395405940.1 ATP-binding protein -
  ACHMW6_RS04590 (ACHMW6_04580) - 846187..846583 (+) 397 Protein_813 NUDIX domain-containing protein -
  ACHMW6_RS04595 (ACHMW6_04585) yacG 846656..846838 (-) 183 WP_395405942.1 DNA gyrase inhibitor YacG -
  ACHMW6_RS04600 (ACHMW6_04590) zapD 846842..847597 (-) 756 WP_395405944.1 cell division protein ZapD -
  ACHMW6_RS04605 (ACHMW6_04595) coaE 847669..848292 (-) 624 WP_395405946.1 dephospho-CoA kinase -
  ACHMW6_RS04610 (ACHMW6_04600) pilD 848294..849166 (-) 873 WP_395408530.1 prepilin peptidase Machinery gene
  ACHMW6_RS04615 (ACHMW6_04605) pilC 849248..850459 (-) 1212 WP_395405948.1 type II secretion system F family protein Machinery gene
  ACHMW6_RS04620 (ACHMW6_04610) pilB 850471..852165 (-) 1695 WP_395405950.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACHMW6_RS04625 (ACHMW6_04615) - 852312..853589 (-) 1278 WP_395405952.1 HlyC/CorC family transporter -
  ACHMW6_RS04630 (ACHMW6_04620) - 853813..854559 (+) 747 WP_395405954.1 helix-turn-helix domain-containing protein -
  ACHMW6_RS04635 (ACHMW6_04625) - 854611..855102 (+) 492 WP_395405956.1 NuoB/complex I 20 kDa subunit family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 44086.02 Da        Isoelectric Point: 9.8543

>NTDB_id=1064694 ACHMW6_RS04615 WP_395405948.1 849248..850459(-) (pilC) [Pseudoduganella sp. UC29_106]
MATAGNVKESVFAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGIMVTKVKKKVYRSGKKITDKDITLFTRQLATMMKAG
VPLLQAFDIVGKGHANPSVSKLILDLRSDIETGTSLNQAFRKFPLYFDPLFCNLVAAGEQAGILEDLLTRLAIYKEKTLA
MKAKIKSALMYPVSILAVAFIVTAVIMIWVVPAFKEVFTSFGADLPAPTVFVMNMSEFFVKWWYLIFGGLFAGLYFFFQS
WRRSLKMQQSMDRLLLRLPIFGDVIRKATVARWTRTLSTMFAAGVPLVESLDSVGGAAGNAVYLDATRKIQTEVSTGTSL
TVAMQNAEVFPSMVTQMVAIGEESGALDSMLGKVADFYEEEVDDAVASLSSLMEPAIMVILGVLIGGLVVAMYLPIFKLG
SVV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=1064694 ACHMW6_RS04615 WP_395405948.1 849248..850459(-) (pilC) [Pseudoduganella sp. UC29_106]
ATGGCAACTGCGGGAAATGTGAAGGAATCAGTCTTCGCCTGGGAAGGCAAGGACAAGACCGGCAAGACCGTGCGCGGCGA
GCTGCGCGCCGGCGGCGAGGCCGTGGTCAATGTGACCCTGCGCCGCCAGGGCATCATGGTCACCAAGGTGAAGAAGAAGG
TGTACCGCTCCGGCAAGAAGATCACGGACAAGGACATCACCCTGTTCACCCGTCAGCTGGCAACCATGATGAAAGCCGGT
GTGCCGCTGCTGCAGGCTTTCGACATCGTGGGCAAGGGCCATGCGAATCCTTCCGTGTCCAAGCTGATCCTGGACCTGCG
CTCGGACATCGAGACCGGTACCTCGCTGAACCAGGCTTTCCGCAAGTTCCCGCTCTACTTCGATCCGCTGTTCTGCAACC
TGGTGGCCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTGACCCGCCTGGCGATCTACAAGGAAAAGACGCTGGCC
ATGAAGGCCAAGATCAAGTCGGCGCTGATGTATCCGGTGTCGATCCTGGCGGTGGCCTTCATCGTGACCGCCGTGATCAT
GATCTGGGTGGTGCCTGCCTTCAAGGAAGTGTTCACCAGCTTCGGCGCCGACCTGCCTGCGCCGACCGTGTTCGTGATGA
ATATGTCCGAATTCTTCGTGAAGTGGTGGTACCTGATCTTCGGCGGCCTGTTCGCCGGGCTGTACTTCTTCTTCCAGTCC
TGGCGTCGCTCGCTCAAGATGCAGCAGTCCATGGACCGCCTGCTGCTGCGCCTGCCCATTTTCGGCGATGTGATTCGCAA
GGCGACTGTGGCGCGCTGGACGCGCACCCTGTCCACCATGTTCGCCGCCGGCGTGCCGCTGGTGGAATCGCTGGACTCGG
TCGGCGGCGCGGCCGGCAATGCCGTCTACCTCGACGCGACGCGCAAGATCCAGACCGAGGTGTCCACCGGTACCAGCCTG
ACGGTGGCGATGCAGAACGCGGAAGTCTTCCCCAGCATGGTGACCCAGATGGTGGCCATCGGCGAGGAATCCGGCGCGCT
CGATTCGATGCTGGGCAAGGTGGCTGACTTTTATGAAGAAGAGGTGGATGATGCGGTGGCTTCGCTCTCCAGCCTGATGG
AGCCGGCAATCATGGTCATCCTCGGCGTGCTGATCGGCGGCCTGGTGGTCGCGATGTATCTGCCGATCTTCAAGCTCGGG
TCGGTCGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.5

99.256

0.551
  pilC Legionella pneumophila strain ERS1305867

54.798

98.263

0.538
  pilG Neisseria gonorrhoeae MS11

53.401

98.511

0.526
  pilG Neisseria meningitidis 44/76-A

53.149

98.511

0.524
  pilC Acinetobacter baumannii D1279779

52.645

98.511

0.519
  pilC Acinetobacter baylyi ADP1

52.261

98.759

0.516
  pilC Vibrio campbellii strain DS40M4

40.547

99.752

0.404
  pilC Vibrio cholerae strain A1552

39.599

99.007

0.392
  pilC Thermus thermophilus HB27

37.594

99.007

0.372

Multiple sequence alignment