Detailed information NTG1064693

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACHMW6_RS04610
• Genome accession: NZ_CP171977
• Coordinates: 848294..849166 (-)
• Length: 290 a.a.
• NCBI ID: WP_395408530.1
• Uniprot ID: -
• Organism: Pseudoduganella sp. UC29_106
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 843294..854166

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHMW6_RS04580 (ACHMW6_04570)	argJ	844077..845315 (+)	1239	WP_395405938.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
ACHMW6_RS04585 (ACHMW6_04575)	-	845315..846187 (+)	873	WP_395405940.1	ATP-binding protein	-
ACHMW6_RS04590 (ACHMW6_04580)	-	846187..846583 (+)	397	Protein_813	NUDIX domain-containing protein	-
ACHMW6_RS04595 (ACHMW6_04585)	yacG	846656..846838 (-)	183	WP_395405942.1	DNA gyrase inhibitor YacG	-
ACHMW6_RS04600 (ACHMW6_04590)	zapD	846842..847597 (-)	756	WP_395405944.1	cell division protein ZapD	-
ACHMW6_RS04605 (ACHMW6_04595)	coaE	847669..848292 (-)	624	WP_395405946.1	dephospho-CoA kinase	-
ACHMW6_RS04610 (ACHMW6_04600)	pilD	848294..849166 (-)	873	WP_395408530.1	prepilin peptidase	Machinery gene
ACHMW6_RS04615 (ACHMW6_04605)	pilC	849248..850459 (-)	1212	WP_395405948.1	type II secretion system F family protein	Machinery gene
ACHMW6_RS04620 (ACHMW6_04610)	pilB	850471..852165 (-)	1695	WP_395405950.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACHMW6_RS04625 (ACHMW6_04615)	-	852312..853589 (-)	1278	WP_395405952.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31446.33 Da
• Isoelectric Point: 8.1423

>NTDB_id=1064693 ACHMW6_RS04610 WP_395408530.1 848294..849166(-) (pilD) [Pseudoduganella sp. UC29_106]
MQETFMLFSPPATTAAAIVAAILGLMVGSFLNVVIHRLPRMMQREMDNYIADEAGKPLPHTDRYNLVVPRSACPHCGHQI
TAMENIPVISWLMLRGRCSHCKAPVSARYPVIEAFTALLSAVFVWKFGSGYAGMAAVVFGWLLIAMTFIDADTKLLPDDL
TYPLLWLGLLMNVNATFVPLQDAVIGAAAGYMVLWTIYWAYKLPTGREGMGYGDFKLLAALGAWMGWHMLPAIILLSSVV
GAVVGITIMIVQRSGRHTQIPFGPYLAGAGVLAMLFGEQISAVLRGVTGG

Nucleotide

• Length: 873 bp

>NTDB_id=1064693 ACHMW6_RS04610 WP_395408530.1 848294..849166(-) (pilD) [Pseudoduganella sp. UC29_106]
ATGCAAGAAACATTCATGCTGTTCTCCCCTCCTGCGACAACGGCAGCCGCCATCGTCGCAGCCATCCTGGGCCTGATGGT
CGGCAGCTTCCTGAACGTGGTGATCCACCGCCTGCCCAGGATGATGCAGCGTGAAATGGACAATTACATCGCGGACGAAG
CCGGCAAGCCCCTGCCGCATACCGACCGCTACAACCTGGTCGTGCCGCGCTCGGCCTGTCCGCACTGCGGCCACCAGATC
ACGGCGATGGAAAACATCCCCGTCATCAGCTGGCTGATGCTGCGCGGCCGCTGCAGCCATTGCAAGGCGCCCGTGTCCGC
GCGCTATCCGGTCATCGAAGCCTTCACGGCCCTGCTGTCGGCAGTCTTCGTGTGGAAGTTCGGCTCCGGCTATGCCGGCA
TGGCAGCCGTGGTCTTCGGCTGGCTGCTGATCGCCATGACCTTCATCGACGCCGACACGAAGCTGCTGCCGGACGACCTG
ACCTACCCCCTGCTCTGGCTCGGCTTGCTGATGAACGTCAACGCCACCTTCGTGCCGCTGCAGGACGCCGTGATCGGCGC
CGCTGCCGGCTATATGGTGCTGTGGACGATCTACTGGGCCTATAAACTGCCCACCGGCCGCGAAGGCATGGGCTACGGCG
ACTTCAAGCTGCTGGCCGCACTTGGCGCCTGGATGGGCTGGCATATGCTGCCGGCCATCATCCTGCTGTCTTCCGTGGTG
GGCGCCGTGGTCGGCATCACGATCATGATCGTGCAGCGCAGCGGACGCCATACCCAGATTCCTTTCGGCCCTTACCTGGC
CGGCGCCGGCGTGCTCGCCATGCTATTCGGCGAACAAATCAGCGCCGTACTGCGCGGCGTGACCGGCGGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.431	92.069	0.51
pilD	Vibrio campbellii strain DS40M4	53.759	91.724	0.493
pilD	Acinetobacter baumannii D1279779	46.909	94.828	0.445
pilD	Acinetobacter nosocomialis M2	46.545	94.828	0.441
pilD	Neisseria gonorrhoeae MS11	47.244	87.586	0.414