Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACHFJ9_RS20015 Genome accession   NZ_CP171887
Coordinates   2620885..2622108 (+) Length   407 a.a.
NCBI ID   WP_017635918.1    Uniprot ID   A0AAW9BMM9
Organism   Vibrio sp. D3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2615885..2627108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS19995 (ACHFJ9_19995) ampD 2616913..2617464 (-) 552 WP_256954321.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACHFJ9_RS20000 (ACHFJ9_20000) nadC 2617557..2618444 (+) 888 WP_395356088.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACHFJ9_RS20005 (ACHFJ9_20005) pilA 2618708..2619172 (+) 465 WP_395356090.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACHFJ9_RS20010 (ACHFJ9_20010) pilB 2619176..2620861 (+) 1686 WP_395356092.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACHFJ9_RS20015 (ACHFJ9_20015) pilC 2620885..2622108 (+) 1224 WP_017635918.1 type II secretion system F family protein Machinery gene
  ACHFJ9_RS20020 (ACHFJ9_20020) pilD 2622173..2623042 (+) 870 WP_395356094.1 prepilin peptidase Machinery gene
  ACHFJ9_RS20025 (ACHFJ9_20025) coaE 2623043..2623657 (+) 615 WP_047008979.1 dephospho-CoA kinase -
  ACHFJ9_RS20030 (ACHFJ9_20030) zapD 2623685..2624425 (+) 741 WP_005396691.1 cell division protein ZapD -
  ACHFJ9_RS20035 (ACHFJ9_20035) yacG 2624584..2624778 (+) 195 WP_005396692.1 DNA gyrase inhibitor YacG -
  ACHFJ9_RS20040 (ACHFJ9_20040) rplS 2625617..2625970 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  ACHFJ9_RS20045 (ACHFJ9_20045) trmD 2626012..2626755 (-) 744 WP_395356098.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45313.50 Da        Isoelectric Point: 10.3992

>NTDB_id=1064653 ACHFJ9_RS20015 WP_017635918.1 2620885..2622108(+) (pilC) [Vibrio sp. D3]
MKSTTPQLKNFRWKGINSSGKKTSGQTLAMTEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGRDITVFTRQISTML
ITGVPLVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RILSKRSDSFRLMLNRSVLKFPVLGPVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1064653 ACHFJ9_RS20015 WP_017635918.1 2620885..2622108(+) (pilC) [Vibrio sp. D3]
ATGAAAAGCACTACACCACAACTTAAAAACTTCCGCTGGAAAGGCATCAACAGTTCAGGCAAAAAGACATCTGGACAAAC
CCTCGCGATGACGGAAATTGAAGTACGCGAGCGTCTAGACGCACAGCACATCAAGATCAAGAAGTTAAAGAAAAGCAGTA
TCTCGTTTCTCACTAAACTCAGCCATCGCGTGAAAGGCAGAGACATCACTGTGTTTACCCGTCAGATTTCGACGATGTTG
ATAACCGGTGTGCCCTTAGTTCAGGCTTTAAAATTGGTCTCAGAAAACCATAAAAAAGCAGAGATGAAATCCATTTTGAT
GAGCGTGACACGCGCCGTCGAAGCGGGAACACCCATGTCAAAAGCCATGCGCACTGCAAGTGAACACTTTGACCCACTCT
ATACCGACCTTATCGCAACAGGTGAGCAATCCGGTAACTTAGCGGAAGTGTTCGAGCGCTTAGCCACCTACCGAGAAAAA
AATGAGCAGCTTCGTGCGAAAGTGATCAAAGCACTGATTTACCCAGCCATGGTAGTGCTAGTAGCGTTAGGCGTGTCGTT
TATCATGCTCACCAAAGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGTTTTGGTGCTGACTTACCGTGGTTTACCAGGC
AAGTGTTAGATCTTTCCGCCTGGACACAAAACTGGAGCCCATTTATAGCACTAGGCTCTATCAGTCTATTTATCTCAGCG
AGAATCCTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAATCGCTCTGTGCTTAAATTTCCTGTCCTCGGGCCCGT
ATTATCAAAAGCCGCTATCGCCAAATTTAGTCGAACACTCGCCACGAGCTTTACAGCAGGCATTCCAATTCTAACCAGTT
TAAAAACCACATCAAAAACCTCAGGAAACTTACACTATCAACTCGCCATAGAAGAAGTTTACCGTGATACCGCCGCAGGT
ATGCCAATGTATGTAGCCATGCGCAACTGTAATGTGTTCCCTGAGTTGGTATTGCAAATGGTCATGATCGGTGAAGAGTC
TGGTCGACTTGACGATATGCTCAATAAAGTTGCAACGATCTACGAGTTTGAAGTCGATAACACCGTCGACAACCTTAGTA
AAATTCTAGAGCCGCTAATTATCGTTTTTTTAGGCATCGTTGTTGGCGGATTAGTGACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

87.224

100

0.872
  pilC Vibrio cholerae strain A1552

73.775

100

0.74
  pilC Acinetobacter baylyi ADP1

43

98.28

0.423
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilC Legionella pneumophila strain ERS1305867

40.295

100

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398

Multiple sequence alignment