Detailed information NTG1064654

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACHFJ9_RS20020
• Genome accession: NZ_CP171887
• Coordinates: 2622173..2623042 (+)
• Length: 289 a.a.
• NCBI ID: WP_395356094.1
• Uniprot ID: -
• Organism: Vibrio sp. D3
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2617173..2628042

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHFJ9_RS20000 (ACHFJ9_20000)	nadC	2617557..2618444 (+)	888	WP_395356088.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACHFJ9_RS20005 (ACHFJ9_20005)	pilA	2618708..2619172 (+)	465	WP_395356090.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
ACHFJ9_RS20010 (ACHFJ9_20010)	pilB	2619176..2620861 (+)	1686	WP_395356092.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACHFJ9_RS20015 (ACHFJ9_20015)	pilC	2620885..2622108 (+)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
ACHFJ9_RS20020 (ACHFJ9_20020)	pilD	2622173..2623042 (+)	870	WP_395356094.1	prepilin peptidase	Machinery gene
ACHFJ9_RS20025 (ACHFJ9_20025)	coaE	2623043..2623657 (+)	615	WP_047008979.1	dephospho-CoA kinase	-
ACHFJ9_RS20030 (ACHFJ9_20030)	zapD	2623685..2624425 (+)	741	WP_005396691.1	cell division protein ZapD	-
ACHFJ9_RS20035 (ACHFJ9_20035)	yacG	2624584..2624778 (+)	195	WP_005396692.1	DNA gyrase inhibitor YacG	-
ACHFJ9_RS20040 (ACHFJ9_20040)	rplS	2625617..2625970 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
ACHFJ9_RS20045 (ACHFJ9_20045)	trmD	2626012..2626755 (-)	744	WP_395356098.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACHFJ9_RS20050 (ACHFJ9_20050)	rimM	2626783..2627331 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
ACHFJ9_RS20055 (ACHFJ9_20055)	rpsP	2627361..2627609 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32511.64 Da
• Isoelectric Point: 7.0195

>NTDB_id=1064654 ACHFJ9_RS20020 WP_395356094.1 2622173..2623042(+) (pilD) [Vibrio sp. D3]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRVR
DNIPVISWLLLKGKCHNCQTTISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
AFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=1064654 ACHFJ9_RS20020 WP_395356094.1 2622173..2623042(+) (pilD) [Vibrio sp. D3]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTTATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACGTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTGTTCGA
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAACCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCACTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GCATTTGGCATCATTCAACTACGCTTGCAAAAACAGGGAATTGAAAAAGCTTTTCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	90.657	100	0.907
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.593	93.426	0.491
pilD	Acinetobacter nosocomialis M2	51.648	94.464	0.488
pilD	Neisseria gonorrhoeae MS11	48.188	95.502	0.46