Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACHFCC_RS02800 Genome accession   NZ_CP171806
Coordinates   586581..587801 (-) Length   406 a.a.
NCBI ID   WP_395140674.1    Uniprot ID   -
Organism   Schlegelella aquatica strain HS-12-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 581581..592801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFCC_RS02765 (ACHFCC_02765) pdeM 581759..582409 (+) 651 WP_395140660.1 ligase-associated DNA damage response endonuclease PdeM -
  ACHFCC_RS02770 (ACHFCC_02770) - 582474..583352 (+) 879 WP_395140662.1 ATP-binding protein -
  ACHFCC_RS02775 (ACHFCC_02775) - 583349..583801 (+) 453 WP_395140664.1 NUDIX domain-containing protein -
  ACHFCC_RS02780 (ACHFCC_02780) - 583890..584126 (-) 237 WP_395140666.1 DNA gyrase inhibitor YacG -
  ACHFCC_RS02785 (ACHFCC_02785) zapD 584128..584880 (-) 753 WP_395140668.1 cell division protein ZapD -
  ACHFCC_RS02790 (ACHFCC_02790) coaE 585049..585651 (-) 603 WP_395140670.1 dephospho-CoA kinase -
  ACHFCC_RS02795 (ACHFCC_02795) pilD 585717..586574 (-) 858 WP_395140672.1 prepilin peptidase Machinery gene
  ACHFCC_RS02800 (ACHFCC_02800) pilC 586581..587801 (-) 1221 WP_395140674.1 type II secretion system F family protein Machinery gene
  ACHFCC_RS02805 (ACHFCC_02805) pilB 587842..589560 (-) 1719 WP_395140676.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACHFCC_RS02810 (ACHFCC_02810) recD 589758..591602 (-) 1845 WP_395140678.1 exodeoxyribonuclease V subunit alpha -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44332.28 Da        Isoelectric Point: 9.8029

>NTDB_id=1064285 ACHFCC_RS02800 WP_395140674.1 586581..587801(-) (pilC) [Schlegelella aquatica strain HS-12-14]
MATAAAAKKVQDFVFEWEGKDRNGKPVRGEMRAGGEAMVSASLRRQGVLVTKVKKRRLSGGKKITQKDIAVFTRQLATMM
RAGVPLLQAFDIVGRGASNPRLTRLLNDIRSDVETGTSLSAAFRKHPLYFDALYCNLVEAGEAGGILETLLDRLAQYQEK
TLEIKRKIKSALIYPVAVLVVAFVVVAIIMIFVIPAFKDIFTSFGADLPAPTLLVIAMSEFFVAYWWLIFGVLIGGSYFF
FESWKRSEKMQKTMDRLLLKVPVFGPLVHKAAVARWTRTLATMFSAGVPLVEALDSVGGASGNAVFLEATEKIQKDVATG
SSLTMSMQQTGVFPTMVLQMCAIGEESGSIDHMLNKAAEFYEAEVDEAVKGLSSLMEPIIIVVLGTIIGGIVVAMYLPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1064285 ACHFCC_RS02800 WP_395140674.1 586581..587801(-) (pilC) [Schlegelella aquatica strain HS-12-14]
ATGGCAACGGCTGCTGCGGCAAAGAAGGTTCAGGATTTCGTATTCGAGTGGGAGGGCAAGGACCGCAACGGCAAACCGGT
GCGCGGCGAGATGCGCGCCGGCGGCGAGGCGATGGTCAGCGCCAGCCTGCGTCGCCAGGGCGTCCTGGTCACCAAGGTGA
AGAAGCGTCGCCTGAGCGGCGGCAAGAAGATCACCCAAAAGGACATCGCCGTCTTCACCCGCCAGCTCGCGACGATGATG
CGCGCCGGCGTGCCCCTGCTGCAGGCCTTCGACATCGTCGGCCGCGGAGCCTCCAACCCGCGCCTGACGCGCCTGCTCAA
CGACATCCGCAGCGACGTCGAGACGGGCACGAGTCTTTCGGCCGCCTTCCGCAAGCATCCGCTCTACTTCGACGCGCTCT
ACTGCAATCTCGTGGAGGCCGGGGAGGCGGGCGGTATCCTCGAGACGCTGCTCGACCGGCTGGCTCAGTACCAGGAGAAG
ACGCTCGAGATCAAGCGCAAGATCAAGTCCGCGCTGATCTACCCGGTGGCGGTGCTGGTGGTGGCCTTCGTCGTGGTGGC
GATCATCATGATCTTCGTGATCCCCGCGTTCAAGGACATCTTCACCTCGTTCGGCGCCGACCTGCCCGCGCCCACGCTGC
TCGTGATCGCGATGTCGGAGTTCTTCGTCGCCTACTGGTGGCTGATCTTCGGCGTGCTGATCGGCGGCTCCTACTTCTTC
TTCGAGTCGTGGAAGCGCTCCGAGAAGATGCAAAAGACGATGGACCGGCTGCTGCTGAAAGTGCCCGTCTTCGGCCCGCT
GGTGCACAAGGCGGCGGTGGCACGCTGGACGCGCACGCTGGCCACGATGTTCTCCGCCGGCGTGCCGCTGGTCGAGGCGC
TCGACTCGGTCGGCGGTGCGTCGGGCAACGCGGTCTTCCTCGAAGCCACCGAGAAGATCCAGAAGGACGTGGCGACCGGC
TCCAGCCTGACCATGTCGATGCAGCAGACCGGCGTCTTCCCGACCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAGTC
CGGCTCGATCGATCACATGCTCAACAAGGCGGCCGAGTTCTACGAGGCCGAGGTGGACGAGGCAGTCAAGGGCCTGTCGA
GCCTCATGGAGCCCATCATCATCGTCGTGCTGGGCACGATCATCGGCGGCATCGTCGTGGCGATGTACCTGCCCATCTTC
AAGCTCGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.96

99.507

0.537
  pilG Neisseria meningitidis 44/76-A

53.25

98.522

0.525
  pilG Neisseria gonorrhoeae MS11

53.25

98.522

0.525
  pilC Legionella pneumophila strain ERS1305867

53.283

97.537

0.52
  pilC Acinetobacter baylyi ADP1

50.488

100

0.51
  pilC Acinetobacter baumannii D1279779

49.877

100

0.5
  pilC Vibrio campbellii strain DS40M4

41.646

98.768

0.411
  pilC Vibrio cholerae strain A1552

41.919

97.537

0.409
  pilC Thermus thermophilus HB27

40.602

98.276

0.399

Multiple sequence alignment