Detailed information NTG1064284

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACHFCC_RS02795
• Genome accession: NZ_CP171806
• Coordinates: 585717..586574 (-)
• Length: 285 a.a.
• NCBI ID: WP_395140672.1
• Uniprot ID: -
• Organism: Schlegelella aquatica strain HS-12-14
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 580717..591574

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHFCC_RS02760 (ACHFCC_02760)	slmA	580998..581651 (+)	654	WP_395140658.1	nucleoid occlusion factor SlmA	-
ACHFCC_RS02765 (ACHFCC_02765)	pdeM	581759..582409 (+)	651	WP_395140660.1	ligase-associated DNA damage response endonuclease PdeM	-
ACHFCC_RS02770 (ACHFCC_02770)	-	582474..583352 (+)	879	WP_395140662.1	ATP-binding protein	-
ACHFCC_RS02775 (ACHFCC_02775)	-	583349..583801 (+)	453	WP_395140664.1	NUDIX domain-containing protein	-
ACHFCC_RS02780 (ACHFCC_02780)	-	583890..584126 (-)	237	WP_395140666.1	DNA gyrase inhibitor YacG	-
ACHFCC_RS02785 (ACHFCC_02785)	zapD	584128..584880 (-)	753	WP_395140668.1	cell division protein ZapD	-
ACHFCC_RS02790 (ACHFCC_02790)	coaE	585049..585651 (-)	603	WP_395140670.1	dephospho-CoA kinase	-
ACHFCC_RS02795 (ACHFCC_02795)	pilD	585717..586574 (-)	858	WP_395140672.1	prepilin peptidase	Machinery gene
ACHFCC_RS02800 (ACHFCC_02800)	pilC	586581..587801 (-)	1221	WP_395140674.1	type II secretion system F family protein	Machinery gene
ACHFCC_RS02805 (ACHFCC_02805)	pilB	587842..589560 (-)	1719	WP_395140676.1	type IV-A pilus assembly ATPase PilB	Machinery gene

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 31184.04 Da
• Isoelectric Point: 8.0302

>NTDB_id=1064284 ACHFCC_RS02795 WP_395140672.1 585717..586574(-) (pilD) [Schlegelella aquatica strain HS-12-14]
MDQESLRWWLSPATLGLLGLVIGSFLNVVIHRLPLMLERQWRRDSAEMLGQPLPEEGPPLNLIRPGSRCPHCERPVRWHE
NIPVLGWLLLRGRCAGCRQPISLRYPVIELLTGTLFALAAWRIGPQWPVLLWCAFLAVLVVLAFIDWDTTLLPDDLTQPL
LWGGLIVSALGWTVPLPSALWGAVAGYLALWGVYWLFKLTTGKEGMGYGDFKLLAAIGAWLGPSMLLPVLIGASVLGTAV
GLVMKASGALREGRYVPFGPFLAGAGGAVFLLGTQTVLEWLGFGF

Nucleotide

• Length: 858 bp

>NTDB_id=1064284 ACHFCC_RS02795 WP_395140672.1 585717..586574(-) (pilD) [Schlegelella aquatica strain HS-12-14]
ATGGACCAGGAATCCTTGCGCTGGTGGCTCTCGCCGGCCACCTTGGGCCTGCTCGGCCTCGTCATCGGCAGCTTCCTCAA
CGTGGTGATCCACCGCCTGCCGCTCATGCTGGAGCGGCAGTGGCGGCGCGACAGCGCCGAGATGCTCGGTCAGCCGCTGC
CCGAGGAAGGGCCGCCGCTCAACCTGATCCGACCGGGCTCGCGCTGCCCGCACTGCGAGCGTCCGGTGCGCTGGCACGAG
AACATCCCGGTGCTCGGCTGGCTGCTGCTGCGCGGCCGCTGCGCCGGCTGCCGCCAGCCCATCTCGCTGCGCTACCCGGT
CATCGAGCTGCTCACGGGCACGCTGTTCGCGCTGGCCGCCTGGCGCATCGGCCCCCAGTGGCCGGTGCTGCTGTGGTGCG
CCTTCCTCGCCGTGCTGGTGGTGCTGGCCTTCATCGACTGGGACACCACCTTGCTGCCCGACGACCTCACCCAGCCGCTG
CTGTGGGGCGGGTTGATCGTCTCCGCGCTGGGCTGGACGGTGCCGCTGCCTTCGGCGCTGTGGGGGGCGGTGGCCGGCTA
TCTCGCGTTGTGGGGCGTGTACTGGCTCTTCAAACTCACCACCGGCAAGGAAGGCATGGGCTACGGCGACTTCAAGCTGC
TCGCGGCCATCGGCGCGTGGCTGGGGCCCTCGATGCTCCTGCCGGTGCTGATCGGCGCGTCGGTGCTCGGCACGGCCGTC
GGTCTCGTGATGAAGGCCAGCGGCGCCTTGCGCGAAGGCCGCTATGTGCCTTTCGGCCCCTTCCTGGCGGGCGCGGGCGG
CGCCGTCTTCCTCCTCGGCACGCAGACCGTGCTGGAATGGCTGGGCTTCGGGTTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-242)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-122)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50	98.947	0.495
pilD	Vibrio campbellii strain DS40M4	47.101	96.842	0.456
pilD	Neisseria gonorrhoeae MS11	49.609	89.825	0.446
pilD	Acinetobacter baumannii D1279779	45.556	94.737	0.432
pilD	Acinetobacter nosocomialis M2	45.185	94.737	0.428