Detailed information NTG0106400

Bioinformatically predicted

Overview

• Name: comE
• Type: Regulator
• Locus tag: AABA07_RS10380
• Genome accession: NZ_AP028608
• Coordinates: 2033690..2034442 (-)
• Length: 250 a.a.
• NCBI ID: WP_000866065.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain Sep3
• Function: activate transcription of early competence genes (predicted from homology) Competence regulation

Genomic Context

Location: 2028690..2039442

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABA07_RS10360	-	2031123..2032726 (-)	1604	Protein_2001	YhgE/Pip domain-containing protein	-
AABA07_RS10365 (TKY120829_20150)	-	2032905..2033447 (+)	543	WP_001158266.1	TetR/AcrR family transcriptional regulator	-
AABA07_RS10380 (TKY120829_20160)	comE	2033690..2034442 (-)	753	WP_000866065.1	competence system response regulator transcription factor ComE	Regulator
AABA07_RS10385 (TKY120829_20170)	comD/comD1	2034439..2035764 (-)	1326	WP_338172752.1	competence system sensor histidine kinase ComD	Regulator
AABA07_RS10390 (TKY120829_20180)	comC/comC1	2035785..2035910 (-)	126	WP_000799689.1	competence-stimulating peptide ComC	Regulator
AABA07_RS10400 (TKY120829_20190)	rlmH	2036192..2036671 (-)	480	WP_000695929.1	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	-
AABA07_RS10405 (TKY120829_20200)	htrA	2036854..2038035 (+)	1182	WP_000681597.1	trypsin-like peptidase domain-containing protein	Regulator
AABA07_RS10410 (TKY120829_20210)	spo0J	2038093..2038851 (+)	759	WP_000410378.1	ParB/RepB/Spo0J family partition protein	Regulator

Sequence

Protein

• Length: 250 a.a.
• Molecular weight: 29958.31 Da
• Isoelectric Point: 6.5073

>NTDB_id=106400 AABA07_RS10380 WP_000866065.1 2033690..2034442(-) (comE) [Streptococcus pneumoniae strain Sep3]
MKVLILEDVIEHQVRLERILDEISKESNIPISYKTTGKVREFEEYIENDEVNQLYFLDIDIHGIEKKGFEVAQLIRHYNP
YAIIVFITSRSEFATLTYKYQVSALDFVDKDINDEMFKKRIEQNIFYTKSMLLENEDVVDYFDYNYKGNDLKIPYHDILY
IETTGVSHKLRIIGKNFAKEFYGTMTDIQEKDKHTQRFYSPHKSFLVNIGNIREIDRKNLEIVFYEDHRCPISRLKIRKL
KDILEKKSQK

Nucleotide

• Length: 753 bp

>NTDB_id=106400 AABA07_RS10380 WP_000866065.1 2033690..2034442(-) (comE) [Streptococcus pneumoniae strain Sep3]
ATGAAAGTTTTAATTTTAGAAGATGTTATTGAACATCAAGTGAGACTAGAGAGAATATTGGATGAAATTTCGAAAGAATC
GAATATTCCAATATCATACAAGACAACGGGAAAAGTCCGTGAATTTGAAGAATACATTGAAAATGATGAAGTAAATCAGC
TTTATTTCCTAGATATCGATATTCATGGAATTGAGAAAAAGGGATTTGAAGTGGCTCAGCTCATTCGTCATTACAATCCT
TACGCTATTATCGTCTTTATCACTAGTCGATCAGAGTTTGCGACTCTAACCTATAAATACCAGGTATCAGCCCTAGATTT
TGTTGATAAGGATATCAATGATGAGATGTTTAAGAAGAGAATTGAGCAAAATATCTTCTACACGAAGAGTATGTTACTTG
AAAATGAAGATGTTGTAGATTATTTCGACTACAATTACAAGGGAAATGATTTAAAAATTCCTTACCATGATATTTTGTAT
ATTGAAACAACAGGGGTCTCTCATAAATTGCGCATTATTGGTAAGAATTTTGCAAAAGAGTTTTATGGTACCATGACAGA
TATTCAGGAAAAGGACAAACATACTCAGCGATTTTATTCTCCTCACAAGTCATTTTTGGTAAATATAGGCAATATCAGAG
AAATTGATCGAAAAAACTTAGAAATTGTTTTCTATGAAGACCATCGTTGTCCTATTTCAAGATTAAAAATTAGAAAATTA
AAAGATATTTTAGAGAAAAAATCTCAAAAGTGA

Domains

Predicted by InterproScan.

• LytTr DNA-binding domain (LytTR) (151-244)

• Response regulator receiver domain (Response_reg) (3-121)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Streptococcus pneumoniae Rx1	100	100	1
comE	Streptococcus pneumoniae D39	100	100	1
comE	Streptococcus pneumoniae R6	100	100	1
comE	Streptococcus pneumoniae TIGR4	100	100	1
comE	Streptococcus mitis SK321	99.2	100	0.992
comE	Streptococcus mitis NCTC 12261	98.4	100	0.984
comE	Streptococcus infantis strain Atu-4	91.2	100	0.912
comE/comE2	Streptococcus gordonii strain NCTC7865	62.8	100	0.628
comE/comE1	Streptococcus gordonii str. Challis substr. CH1	62.8	100	0.628
comE/blpR	Streptococcus mutans UA159	41.296	98.8	0.408