Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   EG65_RS05905 Genome accession   NZ_CP007603
Coordinates   1259585..1260358 (+) Length   257 a.a.
NCBI ID   WP_000404461.1    Uniprot ID   -
Organism   Helicobacter pylori J166     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1254585..1265358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG65_RS05900 (EG65_06185) hopL 1255898..1259572 (+) 3675 WP_026938699.1 Hop family outer membrane protein HopL -
  EG65_RS05905 (EG65_06190) proC 1259585..1260358 (+) 774 WP_000404461.1 pyrroline-5-carboxylate reductase Machinery gene
  EG65_RS05910 (EG65_06195) fic 1260386..1260919 (+) 534 WP_000549892.1 protein adenylyltransferase Fic -
  EG65_RS05915 (EG65_06200) ybeY 1261166..1261588 (-) 423 WP_026938700.1 rRNA maturation RNase YbeY -
  EG65_RS05920 (EG65_06205) - 1261642..1262136 (-) 495 WP_000516049.1 flavodoxin -
  EG65_RS05925 (EG65_06210) - 1262228..1262809 (-) 582 WP_001879496.1 DedA family protein -
  EG65_RS05930 (EG65_06215) ccoS 1262933..1263124 (+) 192 WP_001090949.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  EG65_RS05935 (EG65_06220) - 1263148..1264119 (+) 972 WP_026938701.1 NAD(P)-binding domain-containing protein -
  EG65_RS05940 (EG65_06225) - 1264127..1265287 (-) 1161 WP_000944824.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28097.60 Da        Isoelectric Point: 7.3008

>NTDB_id=106401 EG65_RS05905 WP_000404461.1 1259585..1260358(+) (proC) [Helicobacter pylori J166]
MEILQFIGYGNMAQAILEGAHEILSKRFILEVTGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVNFEALSNAIDSLHYLKCMPNIASKFALSSTAVCEKSVAPSISEKALSIIESFGNCVRVGNEEQVD
SSVATNGSALAFLSLVASSLKDAGIREGLSARDSLELVEMSFKGFAKLLEKERPEVIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACHESVKKMHL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=106401 EG65_RS05905 WP_000404461.1 1259585..1260358(+) (proC) [Helicobacter pylori J166]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCGCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGGTTACCGGGCGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCTTTAGCCGGGGTAAATTTTGAAGCTTTAAGCAATGCGATAGATTCTTT
ACATTACTTAAAATGCATGCCCAATATCGCGAGCAAGTTCGCCCTTTCTTCTACAGCGGTGTGCGAAAAATCGGTTGCGC
CTTCAATAAGTGAGAAAGCTTTGAGTATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTGGAT
TCTAGCGTGGCGACAAACGGAAGCGCGCTCGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGACGCCGGTATTAGAGA
GGGCTTGAGTGCTAGAGATTCTTTAGAATTGGTGGAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAGGTGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGAGGAGCGTTCATCAAAGCATGTCATGAAAGCGTGAAAAAAATGCACCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-254)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366

Multiple sequence alignment