Detailed information NTG0106358

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: AABA07_RS06815
• Genome accession: NZ_AP028608
• Coordinates: 1351867..1352337 (-)
• Length: 156 a.a.
• NCBI ID: WP_000609611.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain Sep3
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1346867..1357337

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABA07_RS06785 (TKY120829_13510)	-	1347442..1348377 (-)	936	WP_000036043.1	manganese-dependent inorganic pyrophosphatase	-
AABA07_RS06790 (TKY120829_13520)	-	1348448..1348747 (-)	300	WP_000349602.1	GIY-YIG nuclease family protein	-
AABA07_RS06795 (TKY120829_13530)	-	1348737..1349486 (-)	750	WP_000390784.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
AABA07_RS06800 (TKY120829_13540)	-	1349540..1349899 (-)	360	WP_000689596.1	S1 RNA-binding domain-containing protein	-
AABA07_RS06805 (TKY120829_13550)	-	1349901..1351301 (-)	1401	WP_000339014.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	-
AABA07_RS06810 (TKY120829_13560)	rpsR	1351596..1351835 (-)	240	WP_000068664.1	30S ribosomal protein S18	-
AABA07_RS06815 (TKY120829_13570)	ssbA	1351867..1352337 (-)	471	WP_000609611.1	single-stranded DNA-binding protein SsbA	Machinery gene
AABA07_RS06820 (TKY120829_13580)	rpsF	1352349..1352639 (-)	291	WP_001151785.1	30S ribosomal protein S6	-
AABA07_RS06825 (TKY120829_13590)	asnS	1352792..1354138 (-)	1347	WP_161801414.1	asparagine--tRNA ligase	-
AABA07_RS06830 (TKY120829_13600)	-	1354154..1354519 (-)	366	WP_000565235.1	VOC family protein	-
AABA07_RS06835 (TKY120829_13610)	-	1354512..1355699 (-)	1188	WP_000777784.1	pyridoxal phosphate-dependent aminotransferase	-
AABA07_RS06840 (TKY120829_13620)	-	1355696..1356184 (-)	489	WP_000747252.1	DUF5590 domain-containing protein	-
AABA07_RS06845 (TKY120829_13630)	-	1356505..1357053 (+)	549	WP_000039617.1	NADPH-dependent FMN reductase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17381.24 Da
• Isoelectric Point: 5.2065

>NTDB_id=106358 AABA07_RS06815 WP_000609611.1 1351867..1352337(-) (ssbA) [Streptococcus pneumoniae strain Sep3]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVRESHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=106358 AABA07_RS06815 WP_000609611.1 1351867..1352337(-) (ssbA) [Streptococcus pneumoniae strain Sep3]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGAGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	53.672	100	0.609
ssb	Latilactobacillus sakei subsp. sakei 23K	54.118	100	0.59
ssbB/cilA	Streptococcus pneumoniae TIGR4	51.282	75	0.385
ssbB	Bacillus subtilis subsp. subtilis str. 168	55.66	67.949	0.378
ssbB/cilA	Streptococcus mitis NCTC 12261	50.427	75	0.378
ssbB/cilA	Streptococcus pneumoniae R6	50.427	75	0.378
ssbB/cilA	Streptococcus mitis SK321	50.427	75	0.378
ssbB/cilA	Streptococcus pneumoniae Rx1	50.427	75	0.378
ssbB/cilA	Streptococcus pneumoniae D39	50.427	75	0.378
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	69.872	0.378
ssb	Glaesserella parasuis strain SC1401	32.022	100	0.365