Detailed information NTG0106203

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: AAA996_RS07210
• Genome accession: NZ_AP028606
• Coordinates: 1421298..1421768 (-)
• Length: 156 a.a.
• NCBI ID: WP_000609611.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain Sep1
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1416298..1426768

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAA996_RS07180 (TKY121773_14220)	-	1416873..1417808 (-)	936	WP_000036043.1	manganese-dependent inorganic pyrophosphatase	-
AAA996_RS07185 (TKY121773_14230)	-	1417879..1418178 (-)	300	WP_000349602.1	GIY-YIG nuclease family protein	-
AAA996_RS07190 (TKY121773_14240)	-	1418168..1418917 (-)	750	WP_000390784.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
AAA996_RS07195 (TKY121773_14250)	-	1418971..1419330 (-)	360	WP_000689596.1	S1 RNA-binding domain-containing protein	-
AAA996_RS07200 (TKY121773_14260)	-	1419332..1420732 (-)	1401	WP_000339014.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	-
AAA996_RS07205 (TKY121773_14270)	rpsR	1421027..1421266 (-)	240	WP_000068664.1	30S ribosomal protein S18	-
AAA996_RS07210 (TKY121773_14280)	ssbA	1421298..1421768 (-)	471	WP_000609611.1	single-stranded DNA-binding protein SsbA	Machinery gene
AAA996_RS07215 (TKY121773_14290)	rpsF	1421780..1422070 (-)	291	WP_001151785.1	30S ribosomal protein S6	-
AAA996_RS07220 (TKY121773_14300)	asnS	1422223..1423569 (-)	1347	WP_161801414.1	asparagine--tRNA ligase	-
AAA996_RS07225 (TKY121773_14310)	-	1423585..1423950 (-)	366	WP_000565220.1	VOC family protein	-
AAA996_RS07230 (TKY121773_14320)	-	1423943..1425130 (-)	1188	WP_000777784.1	pyridoxal phosphate-dependent aminotransferase	-
AAA996_RS07235 (TKY121773_14330)	-	1425127..1425615 (-)	489	WP_000747252.1	DUF5590 domain-containing protein	-
AAA996_RS07240 (TKY121773_14340)	-	1425936..1426484 (+)	549	WP_000039617.1	NADPH-dependent FMN reductase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17381.24 Da
• Isoelectric Point: 5.2065

>NTDB_id=106203 AAA996_RS07210 WP_000609611.1 1421298..1421768(-) (ssbA) [Streptococcus pneumoniae strain Sep1]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVRESHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=106203 AAA996_RS07210 WP_000609611.1 1421298..1421768(-) (ssbA) [Streptococcus pneumoniae strain Sep1]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGAGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	53.672	100	0.609
ssb	Latilactobacillus sakei subsp. sakei 23K	54.118	100	0.59
ssbB/cilA	Streptococcus pneumoniae TIGR4	51.282	75	0.385
ssbB	Bacillus subtilis subsp. subtilis str. 168	55.66	67.949	0.378
ssbB/cilA	Streptococcus mitis NCTC 12261	50.427	75	0.378
ssbB/cilA	Streptococcus pneumoniae R6	50.427	75	0.378
ssbB/cilA	Streptococcus mitis SK321	50.427	75	0.378
ssbB/cilA	Streptococcus pneumoniae Rx1	50.427	75	0.378
ssbB/cilA	Streptococcus pneumoniae D39	50.427	75	0.378
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	69.872	0.378
ssb	Glaesserella parasuis strain SC1401	32.022	100	0.365