Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACGTHP_RS08640 | Genome accession | NZ_CP171396 |
| Coordinates | 1871957..1872394 (+) | Length | 145 a.a. |
| NCBI ID | WP_000993715.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain T14 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1866957..1877394
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACGTHP_RS08620 (ACGTHP_08620) | - | 1868347..1869234 (+) | 888 | WP_001017320.1 | metal-dependent hydrolase | - |
| ACGTHP_RS08625 (ACGTHP_08625) | - | 1869365..1869955 (+) | 591 | WP_000846931.1 | LemA family protein | - |
| ACGTHP_RS08630 (ACGTHP_08630) | - | 1869977..1871059 (+) | 1083 | WP_001246380.1 | YgcG family protein | - |
| ACGTHP_RS08635 (ACGTHP_08635) | - | 1871053..1871613 (+) | 561 | WP_004839782.1 | TPM domain-containing protein | - |
| ACGTHP_RS08640 (ACGTHP_08640) | pilA | 1871957..1872394 (+) | 438 | WP_000993715.1 | pilin | Machinery gene |
| ACGTHP_RS08645 (ACGTHP_08645) | - | 1872452..1873762 (+) | 1311 | WP_000914627.1 | O-antigen ligase | - |
| ACGTHP_RS08650 (ACGTHP_08650) | - | 1873869..1875497 (+) | 1629 | WP_001195765.1 | PglL family O-oligosaccharyltransferase | - |
| ACGTHP_RS08655 (ACGTHP_08655) | bfr | 1875538..1876002 (-) | 465 | WP_000678123.1 | bacterioferritin | - |
| ACGTHP_RS08660 (ACGTHP_08660) | - | 1876247..1876441 (-) | 195 | WP_000289091.1 | bacterioferritin-associated ferredoxin | - |
| ACGTHP_RS08665 (ACGTHP_08665) | - | 1876651..1877034 (-) | 384 | WP_000090000.1 | RidA family protein | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 15022.14 Da Isoelectric Point: 8.1097
>NTDB_id=1061088 ACGTHP_RS08640 WP_000993715.1 1871957..1872394(+) (pilA) [Acinetobacter baumannii strain T14]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQVSTGLADITAGKTNAETKLAEGLTAALTDVEALGLQKSTNAC
STITTSIGTNGASNITCTLKGTSQINSKKIEWIRDADNATNGTTGAWRCKTDVAENLRPKSCGAS
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQVSTGLADITAGKTNAETKLAEGLTAALTDVEALGLQKSTNAC
STITTSIGTNGASNITCTLKGTSQINSKKIEWIRDADNATNGTTGAWRCKTDVAENLRPKSCGAS
Nucleotide
Download Length: 438 bp
>NTDB_id=1061088 ACGTHP_RS08640 WP_000993715.1 1871957..1872394(+) (pilA) [Acinetobacter baumannii strain T14]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTAGTTGCCATTATTGGTATTTTGGCTGCGATTGCGAT
TCCTGCTTATCAAAACTACATTGCTAAGTCACAAGTAAGTACTGGTTTAGCTGATATTACTGCTGGTAAGACAAACGCAG
AAACTAAATTAGCAGAAGGTTTAACTGCGGCATTAACTGATGTAGAAGCTTTAGGCTTACAAAAATCTACGAATGCTTGT
AGTACTATTACAACCAGTATCGGAACTAATGGTGCAAGTAATATTACTTGTACATTGAAAGGTACATCACAAATTAATAG
TAAAAAAATTGAATGGATCCGTGATGCAGATAATGCTACAAATGGTACGACAGGTGCTTGGCGCTGTAAAACTGATGTAG
CTGAAAACTTACGTCCTAAATCATGTGGTGCTTCTTAA
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTAGTTGCCATTATTGGTATTTTGGCTGCGATTGCGAT
TCCTGCTTATCAAAACTACATTGCTAAGTCACAAGTAAGTACTGGTTTAGCTGATATTACTGCTGGTAAGACAAACGCAG
AAACTAAATTAGCAGAAGGTTTAACTGCGGCATTAACTGATGTAGAAGCTTTAGGCTTACAAAAATCTACGAATGCTTGT
AGTACTATTACAACCAGTATCGGAACTAATGGTGCAAGTAATATTACTTGTACATTGAAAGGTACATCACAAATTAATAG
TAAAAAAATTGAATGGATCCGTGATGCAGATAATGCTACAAATGGTACGACAGGTGCTTGGCGCTGTAAAACTGATGTAG
CTGAAAACTTACGTCCTAAATCATGTGGTGCTTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
52.414 |
100 |
0.524 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
44.218 |
100 |
0.448 |
| pilA | Vibrio cholerae strain A1552 |
44.218 |
100 |
0.448 |
| pilA | Vibrio cholerae C6706 |
44.218 |
100 |
0.448 |
| pilA | Pseudomonas aeruginosa PAK |
41.558 |
100 |
0.441 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
43.357 |
98.621 |
0.428 |
| comP | Acinetobacter baylyi ADP1 |
40 |
100 |
0.414 |
| pilA | Haemophilus influenzae 86-028NP |
38.816 |
100 |
0.407 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.845 |
97.931 |
0.4 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
43.651 |
86.897 |
0.379 |