Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACFN7Z_RS01425 Genome accession   NZ_CP171157
Coordinates   313920..315998 (+) Length   692 a.a.
NCBI ID   WP_395442458.1    Uniprot ID   -
Organism   Acinetobacter sp. P1332     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 308920..320998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFN7Z_RS01405 (ACFN7Z_01405) pilM 310940..311998 (+) 1059 WP_395442454.1 pilus assembly protein PilM Machinery gene
  ACFN7Z_RS01410 (ACFN7Z_01410) pilN 311998..312654 (+) 657 WP_395442456.1 PilN domain-containing protein Machinery gene
  ACFN7Z_RS01415 (ACFN7Z_01415) pilO 312651..313373 (+) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACFN7Z_RS01420 (ACFN7Z_01420) pilP 313373..313900 (+) 528 WP_094148569.1 pilus assembly protein PilP Machinery gene
  ACFN7Z_RS01425 (ACFN7Z_01425) pilQ 313920..315998 (+) 2079 WP_395442458.1 type IV pilus secretin PilQ Machinery gene
  ACFN7Z_RS01430 (ACFN7Z_01430) - 316087..316569 (+) 483 WP_249303512.1 shikimate kinase -
  ACFN7Z_RS01435 (ACFN7Z_01435) aroB 316600..317685 (+) 1086 WP_395442460.1 3-dehydroquinate synthase -
  ACFN7Z_RS01440 (ACFN7Z_01440) - 317693..318532 (+) 840 WP_395442462.1 hypothetical protein -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75060.11 Da        Isoelectric Point: 5.0465

>NTDB_id=1060360 ACFN7Z_RS01425 WP_395442458.1 313920..315998(+) (pilQ) [Acinetobacter sp. P1332]
MNNSAKDFIFGDGNTMNHMFRQFSMGAIAMAVMQAASAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLV
LDFDKAQQSLKQGSIAVATAEASTVDVTSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSVNPALATPVAAARSEQGIS
NIGFQRGSDGEGQVVIDLKGSNTPVDVKQQGSKIVVRVLGNKIPAHLSRRLNVNDFATPVSTIDAQNDGSNGLITIQSNG
SFEYMAYQAEDKLTISLKRPEDKNPMKPKAPSAYTGKKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNITLRLKDV
PWDQALDIIMKTKNLDKRRNGNVIWIAPVAELIKSEDDEAKAIAQSIKLAPIQTDYIQLSYAKAADILKLLEDSRNSKGA
ASNGTAGTDSLALESLLSSRGSVVADLRTNTLIVNDTSQNIDKIRRMIDLLDVAVKQVMVEARIVTAQTDFSRELGIRWS
AQKLNNNPVWGGDFQPSFDLGVDLATGTAGTFNFGLLKISDYMLNLELTALQADGHGEVLSAPKVLTGDKQKAYILRGDQ
IPYQTWSADTGTTTSFVDANLKLEVTPSITPDGRVQMSLKIEKDTVGTLTSAGYLINTNELETNVLVDDGETVVLGGIFD
DIKQNQYEKVPFFGDLPVVGALFKNNTKSSAQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=1060360 ACFN7Z_RS01425 WP_395442458.1 313920..315998(+) (pilQ) [Acinetobacter sp. P1332]
ATGAATAATAGTGCTAAAGATTTTATATTTGGGGATGGCAATACGATGAACCATATGTTCCGTCAGTTTTCAATGGGTGC
AATTGCAATGGCGGTGATGCAGGCTGCAAGTGCGCAAGTCAGTATTACGAATATTGTGCCGATGCAAATTCCGGGACAGG
GAACAGAAATTCGTGTCATGTTCAACGGTTTGCCACCACAGCCGCAGGCCTATCAGTTGGAACAGCCATCCCGTTTGGTT
TTAGATTTTGATAAAGCACAGCAGAGCTTAAAACAAGGCAGTATTGCAGTGGCAACGGCTGAAGCTAGCACTGTGGATGT
GACTTCAGATGCACAGCGTTCACGTTTAACCGTAAATTTGGCTGATGCCGGTGCATTTACTACACGTGTTGAAGGTAATA
CCTTTATTCTGAAAATTAACTCAGTGAACCCAGCGCTAGCAACACCTGTTGCTGCAGCGCGTTCAGAGCAAGGTATTTCA
AATATTGGATTCCAACGTGGTTCAGACGGCGAAGGCCAAGTTGTCATTGATTTAAAAGGTAGCAATACCCCTGTCGATGT
GAAACAACAAGGTAGTAAAATTGTGGTGCGCGTTTTGGGGAATAAAATTCCTGCCCACTTATCGCGCCGTCTCAATGTGA
ATGATTTCGCAACGCCTGTATCGACCATCGATGCACAAAACGATGGCAGTAACGGCCTGATCACGATCCAATCGAATGGC
AGTTTTGAATATATGGCTTATCAGGCTGAAGATAAGCTCACCATTAGTTTAAAGCGTCCTGAAGATAAAAATCCAATGAA
GCCTAAAGCACCAAGTGCTTATACAGGCAAAAAGATTTCTTTAGATTTTCAAGATATTGAAGTGCGACGTGTATTACAGC
TCTTGGCTGATTTTACAGGCATTAACATGGTGGCTTCTGACACTGTACAAGGTAATATTACCTTGCGCCTGAAGGATGTT
CCGTGGGATCAGGCGCTTGATATCATTATGAAAACCAAGAACTTGGATAAACGACGTAATGGTAATGTAATTTGGATTGC
TCCTGTAGCTGAACTGATCAAATCTGAGGATGATGAAGCTAAAGCCATTGCACAAAGTATTAAACTTGCACCGATTCAAA
CCGATTATATTCAGTTGAGCTATGCGAAAGCTGCTGATATTTTAAAATTGCTAGAAGATTCTCGAAATAGCAAAGGGGCG
GCATCCAACGGTACGGCTGGCACAGATTCACTAGCTTTAGAAAGCTTATTGAGTTCACGCGGTAGTGTGGTTGCCGATTT
ACGAACCAATACTTTAATCGTAAACGACACATCGCAGAACATTGATAAGATCCGCCGGATGATTGACTTACTTGATGTTG
CAGTGAAACAGGTGATGGTTGAAGCCCGTATTGTAACTGCACAAACAGATTTCTCTCGCGAATTGGGAATTCGTTGGAGT
GCGCAAAAACTCAATAACAATCCTGTGTGGGGTGGGGATTTCCAACCGAGTTTTGATTTAGGAGTAGATTTGGCAACGGG
TACGGCGGGAACGTTTAACTTTGGTTTGTTAAAAATCTCAGACTATATGTTGAATCTTGAGTTAACTGCGCTACAAGCAG
ATGGTCATGGTGAAGTTTTGTCGGCGCCTAAAGTACTTACTGGTGATAAACAGAAAGCCTATATTCTACGTGGAGATCAA
ATTCCTTATCAAACGTGGAGTGCGGATACAGGAACAACAACTAGTTTTGTTGATGCGAATTTGAAGTTGGAAGTCACGCC
AAGTATTACACCTGATGGTCGCGTACAAATGTCGCTAAAAATTGAAAAAGATACAGTTGGTACACTAACATCAGCAGGGT
ATTTAATTAATACAAATGAACTTGAAACTAATGTTTTGGTTGATGATGGTGAAACAGTCGTACTTGGCGGTATTTTTGAT
GACATTAAGCAAAATCAATATGAGAAAGTTCCATTTTTTGGGGATTTACCTGTAGTGGGTGCTTTATTTAAAAATAACAC
CAAATCTAGTGCGCAAACTGAGTTATTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(55-135)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-457)

Bacterial type II and III secretion system protein (Secretin)

(530-684)

Secretin and TonB N terminus short domain (STN)

(305-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

65.928

100

0.688
  pilQ Acinetobacter baumannii strain A118

65.789

100

0.686
  comQ Acinetobacter baylyi ADP1

63.01

100

0.647
  pilQ Pseudomonas aeruginosa PAK

39.768

99.566

0.396
  pilQ Legionella pneumophila strain Lp02

37.736

99.566

0.376
  pilQ Legionella pneumophila strain ERS1305867

37.775

98.699

0.373

Multiple sequence alignment