Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ACFN7Z_RS01420 Genome accession   NZ_CP171157
Coordinates   313373..313900 (+) Length   175 a.a.
NCBI ID   WP_094148569.1    Uniprot ID   -
Organism   Acinetobacter sp. P1332     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 308373..318900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFN7Z_RS01405 (ACFN7Z_01405) pilM 310940..311998 (+) 1059 WP_395442454.1 pilus assembly protein PilM Machinery gene
  ACFN7Z_RS01410 (ACFN7Z_01410) pilN 311998..312654 (+) 657 WP_395442456.1 PilN domain-containing protein Machinery gene
  ACFN7Z_RS01415 (ACFN7Z_01415) pilO 312651..313373 (+) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACFN7Z_RS01420 (ACFN7Z_01420) pilP 313373..313900 (+) 528 WP_094148569.1 pilus assembly protein PilP Machinery gene
  ACFN7Z_RS01425 (ACFN7Z_01425) pilQ 313920..315998 (+) 2079 WP_395442458.1 type IV pilus secretin PilQ Machinery gene
  ACFN7Z_RS01430 (ACFN7Z_01430) - 316087..316569 (+) 483 WP_249303512.1 shikimate kinase -
  ACFN7Z_RS01435 (ACFN7Z_01435) aroB 316600..317685 (+) 1086 WP_395442460.1 3-dehydroquinate synthase -
  ACFN7Z_RS01440 (ACFN7Z_01440) - 317693..318532 (+) 840 WP_395442462.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19371.56 Da        Isoelectric Point: 7.1331

>NTDB_id=1060359 ACFN7Z_RS01420 WP_094148569.1 313373..313900(+) (pilP) [Acinetobacter sp. P1332]
MKYQNLMLSLCVGLFLVGCDSRIDAVNMQMAEIRNQPPLPIEPAPDFPPVPTFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNLSRQLQPLESYAIESLNMKGSMRGQNGQILALIQTPDGEIERVQRGSYLGMNHGRVINITATQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1060359 ACFN7Z_RS01420 WP_094148569.1 313373..313900(+) (pilP) [Acinetobacter sp. P1332]
ATGAAATATCAAAATCTCATGCTTAGTCTCTGCGTTGGACTATTCCTTGTCGGTTGTGATTCACGTATTGATGCGGTCAA
TATGCAAATGGCTGAAATTCGCAATCAGCCACCATTGCCGATTGAGCCTGCGCCAGATTTTCCACCTGTACCGACTTTTA
ATTATGCCGCACATCAATTAAAGAGTCCGTTTATGCCAAGCTCATTGGCAGCTGAATTGAAAATTATGGCTGGAAAGCGT
GTTTATCCAAACTTATCTCGCCAATTACAACCTTTGGAAAGTTATGCGATTGAATCGCTTAACATGAAAGGTAGTATGCG
CGGGCAAAATGGACAAATTTTGGCGTTGATTCAAACACCTGATGGTGAAATTGAACGCGTGCAGCGTGGTAGTTATTTGG
GGATGAATCATGGTCGTGTGATTAATATCACCGCCACACAAATTGATTTGATTGAAATTATTCCGGATGGGCGTGAGGGC
TATGTCGAGCGCCCGAGAAGCCTAGTATTAATTGGGCCGGCGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(29-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

77.143

100

0.771
  comL Acinetobacter baylyi ADP1

71.429

100

0.714

Multiple sequence alignment