Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilO   Type   Machinery gene
Locus tag   ACFN7Z_RS01415 Genome accession   NZ_CP171157
Coordinates   312651..313373 (+) Length   240 a.a.
NCBI ID   WP_004691497.1    Uniprot ID   A0A380U8X3
Organism   Acinetobacter sp. P1332     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 307651..318373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFN7Z_RS01400 (ACFN7Z_01400) ponA 308246..310774 (-) 2529 WP_395442452.1 penicillin-binding protein PBP1a -
  ACFN7Z_RS01405 (ACFN7Z_01405) pilM 310940..311998 (+) 1059 WP_395442454.1 pilus assembly protein PilM Machinery gene
  ACFN7Z_RS01410 (ACFN7Z_01410) pilN 311998..312654 (+) 657 WP_395442456.1 PilN domain-containing protein Machinery gene
  ACFN7Z_RS01415 (ACFN7Z_01415) pilO 312651..313373 (+) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACFN7Z_RS01420 (ACFN7Z_01420) pilP 313373..313900 (+) 528 WP_094148569.1 pilus assembly protein PilP Machinery gene
  ACFN7Z_RS01425 (ACFN7Z_01425) pilQ 313920..315998 (+) 2079 WP_395442458.1 type IV pilus secretin PilQ Machinery gene
  ACFN7Z_RS01430 (ACFN7Z_01430) - 316087..316569 (+) 483 WP_249303512.1 shikimate kinase -
  ACFN7Z_RS01435 (ACFN7Z_01435) aroB 316600..317685 (+) 1086 WP_395442460.1 3-dehydroquinate synthase -

Sequence


Protein


Download         Length: 240 a.a.        Molecular weight: 27004.43 Da        Isoelectric Point: 4.9937

>NTDB_id=1060358 ACFN7Z_RS01415 WP_004691497.1 312651..313373(+) (pilO) [Acinetobacter sp. P1332]
MSRDEFEELTSENHAVTKKKMTVDKFFQQFNTLDPNNYGSWPFSVKLTCWIFIILVIGALGYFVVIKPKLDAISNAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVSGVNSGLKFKNIRLEPEIRQEFFIEQP
ISIEATGDYHSFGSFVSGIAALPRIVTLHDFDISASSNNEKKTDIPQISYSVKAKTYRYVGATAAASVENTAKADAGGAQ

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1060358 ACFN7Z_RS01415 WP_004691497.1 312651..313373(+) (pilO) [Acinetobacter sp. P1332]
ATGAGTCGCGATGAATTTGAAGAATTAACATCAGAAAACCATGCTGTAACCAAGAAAAAAATGACGGTTGATAAATTTTT
TCAACAGTTTAATACCCTAGATCCAAACAATTACGGTAGTTGGCCGTTTTCAGTCAAATTGACTTGTTGGATCTTTATCA
TTTTAGTGATTGGGGCATTGGGTTATTTTGTCGTGATTAAGCCGAAGCTTGATGCGATTTCAAATGCACATGCACAAGAG
CAAAATTTACTGAATGAGTTTCGTGAAAAAGATTCAAAATTACGTAATTTGCAGCAATATCAAGCGCAATTGCAAGAAAT
GGAAGCCAATTTTAATCAGCAGTTAGAACAGCTGCCGAAAGAAACTGAAATTCCTGGCTTGGTTGAAGATATCAACGTGA
GCGGCGTAAATTCTGGATTAAAGTTTAAAAATATTCGTTTAGAACCAGAAATTCGCCAAGAGTTCTTTATCGAACAGCCG
ATTTCCATTGAAGCGACTGGTGATTATCATTCTTTTGGTTCATTTGTCAGTGGAATTGCAGCTTTGCCGCGTATTGTGAC
CTTGCATGACTTCGATATCTCAGCATCAAGTAATAATGAGAAAAAGACGGATATTCCGCAAATTTCATACAGTGTAAAGG
CTAAAACTTACCGCTATGTCGGGGCGACAGCTGCTGCAAGTGTGGAAAATACAGCTAAAGCAGATGCAGGAGGTGCTCAG
TAA

Domains


Predicted by InterproScan.

(74-220)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A380U8X3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.385

99.583

0.721

  comO Acinetobacter baylyi ADP1

67.755

100

0.692


Multiple sequence alignment