Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACFN7Z_RS01410 Genome accession   NZ_CP171157
Coordinates   311998..312654 (+) Length   218 a.a.
NCBI ID   WP_395442456.1    Uniprot ID   -
Organism   Acinetobacter sp. P1332     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 306998..317654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFN7Z_RS01395 (ACFN7Z_01395) - 307408..308214 (+) 807 WP_333654030.1 putative RNA methyltransferase -
  ACFN7Z_RS01400 (ACFN7Z_01400) ponA 308246..310774 (-) 2529 WP_395442452.1 penicillin-binding protein PBP1a -
  ACFN7Z_RS01405 (ACFN7Z_01405) pilM 310940..311998 (+) 1059 WP_395442454.1 pilus assembly protein PilM Machinery gene
  ACFN7Z_RS01410 (ACFN7Z_01410) pilN 311998..312654 (+) 657 WP_395442456.1 PilN domain-containing protein Machinery gene
  ACFN7Z_RS01415 (ACFN7Z_01415) pilO 312651..313373 (+) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACFN7Z_RS01420 (ACFN7Z_01420) pilP 313373..313900 (+) 528 WP_094148569.1 pilus assembly protein PilP Machinery gene
  ACFN7Z_RS01425 (ACFN7Z_01425) pilQ 313920..315998 (+) 2079 WP_395442458.1 type IV pilus secretin PilQ Machinery gene
  ACFN7Z_RS01430 (ACFN7Z_01430) - 316087..316569 (+) 483 WP_249303512.1 shikimate kinase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24260.67 Da        Isoelectric Point: 5.1439

>NTDB_id=1060357 ACFN7Z_RS01410 WP_395442456.1 311998..312654(+) (pilN) [Acinetobacter sp. P1332]
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWFFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFFV
AEEKKDKAPSSIVPRVEETYGTFVVTADLDEIAQPVAPDATTPEAASTVNNSTAGAAQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=1060357 ACFN7Z_RS01410 WP_395442456.1 311998..312654(+) (pilN) [Acinetobacter sp. P1332]
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCCTATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTGGCTTGGTTCTTTTACAGTCAAAAACTTGAAGATCAAGAGCAAGCCA
ATCAGTTGGTGGTGAGTACAAATCAAAACTTAGATGTTCAATTAAAGTCATTGGAAGGTCTGCAAGAGCAGCGCAATGCG
ATTGTTGAACGGATGAAGTTGATCCAAGGCTTGCAAGGTCAACGTCCTGTGGCTGTGCGTTTAGTCGATGAAATGGTGCG
TGTTACACCGAGTAATATGTATATTACTAAGTTTGTGCGTACGGGTGATAAATTTACCATTGAAGGGAAAGCGGAAAGCC
CGAATACAGTTGCGGAATTCTTACGTAACCTAGAAGCATCGGCGTGGTATCGCAATGCCTTTATGAATTCATTCTTTGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGTTCCATTGTGCCGCGTGTTGAAGAAACCTATGGCACCTTTGTGGTCACGGC
AGATTTAGATGAGATTGCTCAGCCAGTAGCGCCTGATGCGACCACACCTGAAGCAGCAAGTACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.378

95.872

0.665
  comN Acinetobacter baylyi ADP1

73.096

90.367

0.661

Multiple sequence alignment