Detailed information NTG1060267

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ACF3M1_RS03275
• Genome accession: NZ_CP171131
• Coordinates: 735124..736278 (-)
• Length: 384 a.a.
• NCBI ID: WP_394005158.1
• Uniprot ID: -
• Organism: Luteimonas sp. WGS1318
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 730124..741278

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF3M1_RS03260 (ACF3M1_03260)	-	732237..733184 (+)	948	WP_394003897.1	Nudix family hydrolase	-
ACF3M1_RS03265 (ACF3M1_03265)	coaE	733589..734215 (-)	627	WP_394003899.1	dephospho-CoA kinase	-
ACF3M1_RS03270 (ACF3M1_03270)	pilD	734232..735095 (-)	864	WP_394003900.1	prepilin peptidase	Machinery gene
ACF3M1_RS03275 (ACF3M1_03275)	pilC	735124..736278 (-)	1155	WP_394005158.1	type II secretion system F family protein	Machinery gene
ACF3M1_RS03280 (ACF3M1_03280)	pilB	736635..738356 (-)	1722	WP_394003902.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACF3M1_RS03285 (ACF3M1_03285)	-	738494..739327 (+)	834	WP_394003903.1	glycosyltransferase family 2 protein	-
ACF3M1_RS03290 (ACF3M1_03290)	-	739332..740498 (+)	1167	WP_394003905.1	DegT/DnrJ/EryC1/StrS family aminotransferase	-
ACF3M1_RS03295 (ACF3M1_03295)	-	740527..741174 (+)	648	WP_394003906.1	NeuD/PglB/VioB family sugar acetyltransferase	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 41570.06 Da
• Isoelectric Point: 9.3532

>NTDB_id=1060267 ACF3M1_RS03275 WP_394005158.1 735124..736278(-) (pilC) [Luteimonas sp. WGS1318]
MKGEQQAKNANLLRAELRRMGIQPSVVKTKGKPLFGKTGKTISAKDIAVFSRQLATMIKSGVPVVQALEIIGSGNKNPRM
ADMVNSMRLDIEGGSSISESLAKHPVQFDELFQNLVRAGESAGVLETVLDTIATYKENTEKLKGKIKKALFYPAAVIAVA
IIVSAILLIFVVPQFEAVFADFGADLPAFTQMIVAASDFLVSYWWAVLGIVAAAAFAFIFTYKRSVPMQHAIDRMMLKIP
VIGPLLHNASIARFSRTLATTFRAGVPLVEALDTVAGATGNTVYEKAVLRMRDDVSVGYQVNMAMKQVNLFPHMVVQMTA
IGEEAGALDTMLMKVAEFYEEEVNNAVDALSSLLEPMIMVFIGGLVGGMVIGMYLPIFKLAAVV

Nucleotide

• Length: 1155 bp

>NTDB_id=1060267 ACF3M1_RS03275 WP_394005158.1 735124..736278(-) (pilC) [Luteimonas sp. WGS1318]
ATGAAGGGGGAGCAGCAGGCGAAGAACGCCAACCTGCTGCGTGCCGAATTGCGCCGCATGGGCATCCAGCCCAGCGTGGT
CAAGACCAAAGGCAAGCCCCTGTTCGGCAAGACCGGGAAGACGATCTCGGCCAAGGACATCGCGGTGTTCAGCCGTCAGC
TGGCGACGATGATCAAGTCCGGCGTACCGGTGGTCCAGGCCCTGGAGATCATCGGTTCGGGCAACAAGAATCCGCGCATG
GCCGACATGGTCAACAGCATGCGCCTCGACATCGAGGGCGGCTCGTCGATCAGCGAATCGCTGGCCAAGCATCCGGTGCA
GTTCGACGAACTGTTCCAGAACCTGGTGCGGGCCGGTGAATCCGCCGGTGTGCTGGAGACGGTGCTCGACACCATCGCCA
CGTACAAGGAAAACACCGAGAAGCTCAAGGGCAAGATCAAGAAGGCGTTGTTCTACCCGGCCGCGGTCATCGCGGTGGCG
ATCATCGTCAGCGCCATCCTGCTGATCTTCGTGGTGCCGCAGTTCGAAGCGGTGTTCGCCGACTTCGGCGCCGACCTTCC
GGCGTTCACACAGATGATCGTGGCGGCGAGTGATTTCCTGGTCAGTTACTGGTGGGCGGTATTGGGCATCGTCGCGGCTG
CCGCGTTCGCCTTCATCTTCACCTACAAGCGTTCGGTGCCGATGCAGCACGCGATCGACCGGATGATGCTGAAGATTCCG
GTGATCGGCCCGCTGCTGCACAACGCCTCGATCGCCCGCTTCTCGCGCACGCTGGCAACGACCTTCCGCGCCGGTGTACC
GCTGGTCGAGGCGCTCGACACCGTGGCCGGCGCGACCGGCAACACCGTCTACGAGAAAGCCGTGCTGCGCATGCGCGACG
ACGTCTCGGTGGGCTACCAGGTCAACATGGCGATGAAGCAGGTCAACCTGTTCCCGCACATGGTGGTGCAGATGACCGCG
ATCGGCGAAGAGGCCGGTGCGCTCGACACGATGCTGATGAAGGTCGCCGAGTTCTACGAGGAAGAGGTCAACAACGCTGT
CGATGCGTTGAGCAGCCTGCTCGAACCGATGATCATGGTGTTCATCGGTGGTCTCGTCGGTGGCATGGTCATCGGCATGT
ACCTGCCGATCTTCAAGCTGGCGGCCGTCGTCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (50-173)

• Type II secretion system (T2SS), protein F (T2SSF) (254-376)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	55.208	100	0.552
pilC	Pseudomonas stutzeri DSM 10701	54.167	100	0.542
pilC	Acinetobacter baylyi ADP1	51.948	100	0.521
pilC	Acinetobacter baumannii D1279779	51.429	100	0.516
pilG	Neisseria gonorrhoeae MS11	45.455	100	0.456
pilG	Neisseria meningitidis 44/76-A	45.195	100	0.453
pilC	Vibrio cholerae strain A1552	41.398	96.875	0.401
pilC	Vibrio campbellii strain DS40M4	40.483	97.135	0.393
pilC	Thermus thermophilus HB27	43.195	88.021	0.38