Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACFKHJ_RS09825 Genome accession   NZ_CP170759
Coordinates   1901900..1902295 (-) Length   131 a.a.
NCBI ID   WP_216806347.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1896900..1907295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHJ_RS09805 rpsG 1898199..1898669 (-) 471 WP_105182784.1 30S ribosomal protein S7 -
  ACFKHJ_RS09810 rpsL 1898686..1899099 (-) 414 WP_002940030.1 30S ribosomal protein S12 -
  ACFKHJ_RS09815 groL 1899329..1900951 (-) 1623 WP_171989720.1 chaperonin GroEL -
  ACFKHJ_RS09820 groES 1901050..1901331 (-) 282 WP_171989719.1 co-chaperone GroES -
  ACFKHJ_RS09825 ssbA 1901900..1902295 (-) 396 WP_216806347.1 single-stranded DNA-binding protein Machinery gene
  ACFKHJ_RS09830 - 1902377..1903309 (+) 933 WP_239604297.1 alpha/beta fold hydrolase -
  ACFKHJ_RS09835 ytpR 1903378..1904001 (-) 624 WP_277745456.1 YtpR family tRNA-binding protein -
  ACFKHJ_RS09840 - 1904020..1904976 (-) 957 WP_392452620.1 DUF1002 domain-containing protein -
  ACFKHJ_RS09845 - 1905020..1905340 (-) 321 WP_277745458.1 thioredoxin family protein -
  ACFKHJ_RS09850 - 1905337..1905621 (-) 285 WP_171989715.1 DUF4651 domain-containing protein -
  ACFKHJ_RS09855 pepA 1905834..1906895 (+) 1062 WP_277940770.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14851.70 Da        Isoelectric Point: 5.0026

>NTDB_id=1059228 ACFKHJ_RS09825 WP_216806347.1 1901900..1902295(-) (ssbA) [Streptococcus parasuis strain FZ1]
MYNKIIAIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1059228 ACFKHJ_RS09825 WP_216806347.1 1901900..1902295(-) (ssbA) [Streptococcus parasuis strain FZ1]
ATGTATAATAAAATCATTGCAATCGGTCGCTTGACGGCCCAACCGGAACTGACTCAAACGCCAAATGGCAAAAATCTGAC
TCGTGTAACAGTCGCAGTCAATCGCCGTTTCAAGACAGAAAATGGCGAACGTGAGGCAGATTTTCTCAATGTTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTCTCCTATGGCAGCAAGGGTAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACCGAAATCTTAGGTCAATCTTTCCAGCTACTCGAAAGCCGCGCCCA
ACGTGCTATGCGTGAAAATAATACTGGTGATGACCTAGCTGACTTGGTCTTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.809

100

0.748
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

43.363

86.26

0.374
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374

Multiple sequence alignment