Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACFE3T_RS01940 Genome accession   NZ_CP170742
Coordinates   396837..398078 (-) Length   413 a.a.
NCBI ID   WP_059113460.1    Uniprot ID   A0AAP3UVF0
Organism   Aeromonas salmonicida strain XN-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 391837..403078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFE3T_RS01915 (ACFE3T_01915) mutT 393816..394223 (+) 408 WP_005314168.1 8-oxo-dGTP diphosphatase MutT -
  ACFE3T_RS01920 (ACFE3T_01920) yacG 394301..394495 (-) 195 WP_005314167.1 DNA gyrase inhibitor YacG -
  ACFE3T_RS01925 (ACFE3T_01925) zapD 394504..395226 (-) 723 WP_021140336.1 cell division protein ZapD -
  ACFE3T_RS01930 (ACFE3T_01930) coaE 395264..395878 (-) 615 WP_005314164.1 dephospho-CoA kinase -
  ACFE3T_RS01935 (ACFE3T_01935) pilD 395898..396773 (-) 876 WP_392400338.1 prepilin peptidase Machinery gene
  ACFE3T_RS01940 (ACFE3T_01940) pilC 396837..398078 (-) 1242 WP_059113460.1 type II secretion system F family protein Machinery gene
  ACFE3T_RS01945 (ACFE3T_01945) pilB 398211..399917 (-) 1707 WP_058394588.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  ACFE3T_RS01950 (ACFE3T_01950) - 400066..401270 (+) 1205 WP_100654772.1 IS3 family transposase -
  ACFE3T_RS01955 (ACFE3T_01955) - 401259..401702 (-) 444 WP_392400339.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACFE3T_RS01960 (ACFE3T_01960) nadC 402046..402903 (-) 858 WP_392400340.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45324.44 Da        Isoelectric Point: 9.8834

>NTDB_id=1059075 ACFE3T_RS01940 WP_059113460.1 396837..398078(-) (pilC) [Aeromonas salmonicida strain XN-7]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTRVSKKSQGLFSKGGARIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSDALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIG
LGIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1059075 ACFE3T_RS01940 WP_059113460.1 396837..398078(-) (pilC) [Aeromonas salmonicida strain XN-7]
ATGGCAACGCTAACGCAAAAACAGAATGCCCCCAAGAAAGTCTTTGCCTTCCGCTGGAGCGGGGTAAATCGCAAGGGTCA
GAAGGTATCCGGCGAGCTACAGGCCGACAGCATCAATACGGTCAAGGCCGAACTGCGCAAGCAGGGGGTCAATGTCACCA
GAGTGAGCAAAAAGAGCCAGGGGCTTTTTTCCAAGGGTGGCGCCAGGATCAAACCGATGGATATCGCCATCGTTTCCCGT
CAGATCACTACAATGCTCTCCGCCGGGGTACCTCTGGTACAGAGCCTGCAGATCATTGCCCGCAGCCATGAGAAAGCCGC
CATGCGCGAGCTGATGGGCCAGATCGCTGCGGATGTGGAGACAGGCACCCCGATGTCAGATGCCCTGCGCCGCCACCCTC
GCCACTTTGATGCGCTCTATTGCGATCTGGTGGAAGCAGGCGAGCAATCCGGCGCGCTGGAAACCATCTACGATCGCATC
GCCACCTATAGAGAAAAGTCGGAAGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTATCCGGCCATGGTCATCCTGGT
CGCCATCGTCGTCACCTCCATACTGCTGCTGTTCGTCATCCCGCAGTTCGAGGACATCTTCAAGAGCTTTGGCGCCGAGC
TGCCCATCTTCACCCAGTTTGTCATCGGCATCTCTCGCTTCATGCAGAATTGGTGGTATGTGATCTTTGGCGGGATAGGG
CTTGGCATTTTCCTTTATGTAAGAGCCTGGCGCGCGTCCCAGAAGGTCAAAGACAACACAGACAAGTTCATCCTCACCAT
TCCCGTGGTGGGCATGATACTGCACAAGGCGGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTCTCGGCGGGCA
TACCCCTGGTGGATGCACTGATCTCGGCCGCCGGCGCCTCAGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTAGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTGGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCGACCATCTTCGAGCAAGAGGTCGATGACT
TGGTCGATGGCCTCACCAGCCTGCTGGAGCCCCTCATCATGGTGGTGCTGGGAGTACTGGTCGGCGGCATGGTCGTCGCC
ATGTACCTGCCCATATTCAAGCTGGGTGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.313

95.884

0.54
  pilC Acinetobacter baumannii D1279779

54.5

96.852

0.528
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.617

98.063

0.496
  pilC Vibrio cholerae strain A1552

47.382

97.094

0.46
  pilC Vibrio campbellii strain DS40M4

46.535

97.821

0.455
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366

Multiple sequence alignment