Detailed information NTG1059074

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACFE3T_RS01935
• Genome accession: NZ_CP170742
• Coordinates: 395898..396773 (-)
• Length: 291 a.a.
• NCBI ID: WP_392400338.1
• Uniprot ID: -
• Organism: Aeromonas salmonicida strain XN-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 390898..401773

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFE3T_RS01910 (ACFE3T_01910)	secA	390929..393649 (+)	2721	WP_021140335.1	preprotein translocase subunit SecA	-
ACFE3T_RS01915 (ACFE3T_01915)	mutT	393816..394223 (+)	408	WP_005314168.1	8-oxo-dGTP diphosphatase MutT	-
ACFE3T_RS01920 (ACFE3T_01920)	yacG	394301..394495 (-)	195	WP_005314167.1	DNA gyrase inhibitor YacG	-
ACFE3T_RS01925 (ACFE3T_01925)	zapD	394504..395226 (-)	723	WP_021140336.1	cell division protein ZapD	-
ACFE3T_RS01930 (ACFE3T_01930)	coaE	395264..395878 (-)	615	WP_005314164.1	dephospho-CoA kinase	-
ACFE3T_RS01935 (ACFE3T_01935)	pilD	395898..396773 (-)	876	WP_392400338.1	prepilin peptidase	Machinery gene
ACFE3T_RS01940 (ACFE3T_01940)	pilC	396837..398078 (-)	1242	WP_059113460.1	type II secretion system F family protein	Machinery gene
ACFE3T_RS01945 (ACFE3T_01945)	pilB	398211..399917 (-)	1707	WP_058394588.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
ACFE3T_RS01950 (ACFE3T_01950)	-	400066..401270 (+)	1205	WP_100654772.1	IS3 family transposase	-
ACFE3T_RS01955 (ACFE3T_01955)	-	401259..401702 (-)	444	WP_392400339.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32393.67 Da
• Isoelectric Point: 7.0169

>NTDB_id=1059074 ACFE3T_RS01935 WP_392400338.1 395898..396773(-) (pilD) [Aeromonas salmonicida strain XN-7]
MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFSSDTPQPEADERYNLMVPRSCCPHCNH
PITALENIPLLSWLWLKGRCRGCQAAISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLLGGYVPLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LVGAIFGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYLSTVL

Nucleotide

• Length: 876 bp

>NTDB_id=1059074 ACFE3T_RS01935 WP_392400338.1 395898..396773(-) (pilD) [Aeromonas salmonicida strain XN-7]
ATGACACTTCTTCTCGAGCTGGCACACGGCTTGCCATGGCTCTACTTCTCGCTGGTATTTCTCTTCTCCCTGATGATCGG
CAGCTTTCTCAATGTGGTGATCCACCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTATTTCA
GTTCAGACACGCCGCAGCCAGAAGCTGACGAGCGCTACAACCTGATGGTGCCGCGCTCCTGCTGCCCTCACTGCAATCAC
CCCATAACGGCACTGGAAAACATTCCCCTGCTGAGCTGGCTCTGGCTCAAAGGTCGCTGCCGGGGCTGCCAGGCCGCCAT
TTCGGCTCGCTATCCGCTGGTGGAGCTGCTGACCGCCCTGCTCTCGGTTGCCGTTGCCATGGTAATAACACCAGGCTGGG
GCACGCTGGCTGCTCTTCTGCTGACCTGGGTGCTGGTGGCGCTCACCTTTATCGATCTGGACAAGATGCTGCTGCCGGAC
CAGCTCACCTTGCCGCTGCTGTGGGGCGGGCTGCTGTTCAACCTGCTGGGCGGATACGTGCCTCTCGGCGATGCTGTCAT
CGGCGCCATGGCAGGCTATCTGGTGCTGTGGAGCCTCTACTGGGCCTTCAAGCTGCTTACCGGCAAGGAGGGCATGGGCT
ATGGGGACTTCAAACTGCTGGCGGCGCTGGGAGCCTGGCTTGGCTGGCAGGCGCTGCCCATAGTACTGCTGCTCTCTTCT
CTGGTCGGCGCCATCTTCGGCATTGGCCTCATTTTGCTGCGCAACCATCACCAGAGCAAACCCATCCCCTTTGGCCCCTA
TCTCGCCATCGCAGGCTGGATCGCACTGCTCTGGGGCGATAGCATCACCCGCTGGTATCTCTCCACTGTCCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.764	98.969	0.601
pilD	Vibrio campbellii strain DS40M4	55.208	98.969	0.546
pilD	Acinetobacter baumannii D1279779	55.019	92.44	0.509
pilD	Acinetobacter nosocomialis M2	55.019	92.44	0.509
pilD	Neisseria gonorrhoeae MS11	49.818	94.502	0.471