Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   AAA982_RS08840 Genome accession   NZ_AP028601
Coordinates   1719709..1720104 (-) Length   131 a.a.
NCBI ID   WP_000282467.1    Uniprot ID   A0A098Z0L0
Organism   Streptococcus pneumoniae strain PF1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1714709..1725104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA982_RS08815 (TKY113292_17250) - 1715167..1715505 (-) 339 WP_001809290.1 helix-turn-helix transcriptional regulator -
  AAA982_RS08820 (TKY113292_17260) - 1715518..1716291 (-) 774 WP_000566048.1 class I SAM-dependent methyltransferase -
  AAA982_RS08825 (TKY113292_17270) - 1716738..1717493 (-) 756 Protein_1725 epoxyqueuosine reductase QueH -
  AAA982_RS08830 (TKY113292_17280) groL 1717631..1719253 (-) 1623 WP_000031585.1 chaperonin GroEL -
  AAA982_RS08835 (TKY113292_17290) groES 1719269..1719553 (-) 285 WP_261805145.1 co-chaperone GroES -
  AAA982_RS08840 (TKY113292_17300) ssbB/cilA 1719709..1720104 (-) 396 WP_000282467.1 single-stranded DNA-binding protein Machinery gene
  AAA982_RS08845 (TKY113292_17310) - 1720182..1720943 (-) 762 WP_317649130.1 SDR family NAD(P)-dependent oxidoreductase -
  AAA982_RS08850 (TKY113292_17320) ytpR 1720976..1721602 (-) 627 WP_317649131.1 YtpR family tRNA-binding protein -
  AAA982_RS08855 (TKY113292_17330) - 1721618..1721935 (-) 318 WP_000615767.1 thioredoxin family protein -
  AAA982_RS08860 (TKY113292_17340) - 1721932..1722231 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  AAA982_RS08865 - 1722429..1722509 (-) 81 WP_223200442.1 hypothetical protein -
  AAA982_RS08870 - 1722516..1722659 (-) 144 WP_000599602.1 cell wall-binding protein -
  AAA982_RS08875 (TKY113292_17350) - 1722868..1723542 (-) 675 WP_000725719.1 hypothetical protein -
  AAA982_RS08880 (TKY113292_17360) - 1723547..1723993 (-) 447 WP_000776595.1 LytTR family DNA-binding domain-containing protein -
  AAA982_RS08885 - 1724107..1724610 (-) 504 WP_000800945.1 phosphatase PAP2 family protein -
  AAA982_RS08890 (TKY113292_17370) - 1724607..1724969 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14925.89 Da        Isoelectric Point: 5.9409

>NTDB_id=105827 AAA982_RS08840 WP_000282467.1 1719709..1720104(-) (ssbB/cilA) [Streptococcus pneumoniae strain PF1]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=105827 AAA982_RS08840 WP_000282467.1 1719709..1720104(-) (ssbB/cilA) [Streptococcus pneumoniae strain PF1]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAACTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTAGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098Z0L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae D39

100

100

1
  ssbB/cilA Streptococcus pneumoniae Rx1

100

100

1
  ssbB/cilA Streptococcus pneumoniae R6

100

100

1
  ssbB/cilA Streptococcus pneumoniae TIGR4

99.237

100

0.992
  ssbB/cilA Streptococcus mitis SK321

98.473

100

0.985
  ssbB/cilA Streptococcus mitis NCTC 12261

98.473

100

0.985
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405

Multiple sequence alignment