Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8630_RS06460 Genome accession   NZ_AP028414
Coordinates   1260405..1260920 (-) Length   171 a.a.
NCBI ID   WP_317667193.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-12583     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1255405..1265920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8630_RS06445 (I12583_12640) - 1255504..1257234 (-) 1731 WP_317667189.1 flagellin A -
  R8630_RS06450 (I12583_12650) - 1257317..1259143 (-) 1827 WP_317667191.1 motility associated factor glycosyltransferase family protein -
  R8630_RS06455 (I12583_12660) - 1259155..1260405 (-) 1251 WP_002869329.1 DUF2920 family protein -
  R8630_RS06460 (I12583_12670) ctsG 1260405..1260920 (-) 516 WP_317667193.1 type II secretion system protein Machinery gene
  R8630_RS06465 (I12583_12680) tsaD 1260921..1261928 (-) 1008 WP_002867317.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8630_RS06470 (I12583_12690) - 1261925..1263319 (-) 1395 WP_002856050.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8630_RS06475 (I12583_12700) dxr 1263321..1264391 (-) 1071 WP_002855670.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8630_RS06480 (I12583_12710) cdsA 1264388..1265113 (-) 726 WP_317667196.1 phosphatidate cytidylyltransferase -
  R8630_RS06485 (I12583_12720) - 1265122..1265460 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18734.67 Da        Isoelectric Point: 8.4866

>NTDB_id=105685 R8630_RS06460 WP_317667193.1 1260405..1260920(-) (ctsG) [Campylobacter jejuni strain IDH-12583]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNIKTLINDISIYTLKNDHLSSIKTMSNVSGIENIDLSN
FNGTKEVNFRVGDDKKCLKLVFINKVDFILMGISSNEASKNAIINAANQSHEDLENVNFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105685 R8630_RS06460 WP_317667193.1 1260405..1260920(-) (ctsG) [Campylobacter jejuni strain IDH-12583]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACATTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGATTGAAAATATCGATCTTAGCAAT
TTTAACGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAAAATGCTTAAAACTTGTTTTTATAAATAAAGTAGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATGTAAACTTTACAAGCTCTTCAAGCAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGCAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

98.246

100

0.982

Multiple sequence alignment