Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O1Q81_RS09340 Genome accession   NZ_CP170385
Coordinates   1940844..1942064 (-) Length   406 a.a.
NCBI ID   WP_386697286.1    Uniprot ID   -
Organism   Lonepinella sp. MS14436     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1935844..1947064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q81_RS09300 (O1Q81_01852) coaE 1935873..1936502 (-) 630 WP_386697267.1 dephospho-CoA kinase -
  O1Q81_RS09305 (O1Q81_01853) - 1936629..1937198 (-) 570 WP_386697269.1 hypothetical protein -
  O1Q81_RS09310 (O1Q81_01854) - 1937376..1937810 (-) 435 WP_386697271.1 hypothetical protein -
  O1Q81_RS09315 (O1Q81_01855) - 1937908..1938408 (-) 501 WP_386697274.1 hypothetical protein -
  O1Q81_RS09320 (O1Q81_01856) - 1938483..1939205 (-) 723 WP_386697276.1 hypothetical protein -
  O1Q81_RS09325 (O1Q81_01857) - 1939467..1939730 (+) 264 WP_386697278.1 type II toxin-antitoxin system prevent-host-death family antitoxin -
  O1Q81_RS09330 (O1Q81_01858) - 1939730..1940149 (+) 420 WP_386697281.1 type II toxin-antitoxin system VapC family toxin -
  O1Q81_RS09335 (O1Q81_01859) - 1940146..1940826 (-) 681 WP_386697283.1 prepilin peptidase -
  O1Q81_RS09340 (O1Q81_01860) pilC 1940844..1942064 (-) 1221 WP_386697286.1 type II secretion system F family protein Machinery gene
  O1Q81_RS09345 (O1Q81_01861) pilB 1942074..1943522 (-) 1449 WP_386697288.1 GspE/PulE family protein Machinery gene
  O1Q81_RS09350 (O1Q81_01862) pilA 1943522..1944016 (-) 495 WP_386694674.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  O1Q81_RS09355 (O1Q81_01863) ampD 1944161..1944706 (+) 546 WP_386697291.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  O1Q81_RS09360 (O1Q81_01864) - 1944710..1945360 (+) 651 WP_386687262.1 HAD family hydrolase -
  O1Q81_RS09365 (O1Q81_01865) - 1945612..1945881 (+) 270 WP_153984892.1 PTS sugar transporter subunit IIB -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 46129.98 Da        Isoelectric Point: 10.0264

>NTDB_id=1056501 O1Q81_RS09340 WP_386697286.1 1940844..1942064(-) (pilC) [Lonepinella sp. MS14436]
MKLKMYRWQGINRLNQKQKGVLIAESEQIARQQLLNRGLQQIKLQQNWQLSTKPNQAEICDTLLQLAILLKSSVPLKNSL
LILLQNCTNIQLNLWLHQLLNQIETGLSFSQALQSQGQFLTLQERQLIQVGEMTGKLATVCNQIAEHRQQSVALQRKLQK
ILLYPMMVLGISVILTALLLIFIVPQFADMYGDNQAQLPFFTQVLLFLSVLLQQYFWLIAVLIVGIIILIKRQLKSSIWL
NQLKIKLISNTPILGNIVQLSRLVGFCRGLHLMLKSGVPLNQALQSFLPQKKTWQNKIELQGDLTLIQEIQSMLHWITQG
YAFSVAVGAELFPIQAQQMLQVGEQSGQLSQMLLHIAESYQQQLDHKIDLLSQMLEPLLMVVIGGLIGLIMLGMYLPIFN
MGSLIQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1056501 O1Q81_RS09340 WP_386697286.1 1940844..1942064(-) (pilC) [Lonepinella sp. MS14436]
ATGAAACTCAAAATGTACCGCTGGCAAGGTATTAATCGGTTAAATCAAAAACAAAAAGGCGTTTTAATTGCTGAAAGTGA
ACAAATCGCACGTCAACAATTATTAAACCGAGGTTTACAGCAAATTAAATTACAGCAAAACTGGCAATTATCCACTAAAC
CGAATCAGGCAGAAATTTGTGATACCTTATTACAATTAGCAATTTTATTAAAATCTTCTGTTCCGTTAAAAAATAGCTTA
TTGATTTTATTGCAAAATTGTACCAATATTCAGTTGAATTTGTGGTTACATCAGCTATTAAATCAAATTGAAACAGGGTT
ATCTTTTTCTCAGGCATTACAGAGTCAAGGGCAATTTTTAACATTACAAGAACGCCAATTAATTCAAGTCGGTGAAATGA
CGGGTAAACTGGCAACGGTGTGTAATCAAATCGCCGAGCATCGTCAACAATCGGTGGCATTACAACGAAAATTGCAGAAA
ATCTTGTTGTATCCGATGATGGTACTCGGTATTTCTGTAATATTGACCGCACTTTTACTGATTTTTATTGTGCCACAATT
TGCCGATATGTATGGTGATAATCAAGCTCAACTACCGTTCTTCACCCAAGTTTTATTATTTTTATCGGTACTGTTACAGC
AATATTTCTGGCTAATTGCTGTGCTGATTGTTGGCATTATTATTCTGATTAAACGTCAATTAAAATCATCGATCTGGCTG
AATCAACTCAAGATAAAATTAATCTCTAACACCCCCATATTAGGCAATATTGTACAACTTTCTAGATTGGTAGGATTTTG
TCGTGGATTGCATTTAATGCTGAAATCAGGTGTGCCATTAAATCAGGCATTGCAGTCATTTTTACCCCAAAAGAAAACTT
GGCAAAACAAGATCGAATTACAAGGGGATTTAACTTTAATTCAAGAAATTCAGTCTATGCTTCATTGGATTACACAAGGC
TATGCTTTTTCAGTAGCAGTGGGAGCAGAATTATTTCCGATACAAGCTCAACAAATGTTGCAGGTAGGTGAGCAATCGGG
ACAACTTTCGCAGATGTTACTGCATATTGCAGAGAGTTATCAGCAACAGCTCGATCATAAAATTGATCTGCTTTCACAAA
TGTTAGAGCCATTGTTAATGGTGGTGATTGGTGGACTGATTGGTTTGATTATGCTCGGGATGTATTTGCCGATTTTTAAT
ATGGGATCCTTAATTCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-185)

Type II secretion system (T2SS), protein F (T2SSF)

(266-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

60.099

100

0.601
  pilC Haemophilus influenzae 86-028NP

59.852

100

0.599
  pilC Glaesserella parasuis strain SC1401

40.399

98.768

0.399

Multiple sequence alignment