Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB5G97_RS19400 Genome accession   NZ_CP170371
Coordinates   4136231..4137472 (+) Length   413 a.a.
NCBI ID   WP_005336136.1    Uniprot ID   A0A0T6QCE0
Organism   Aeromonas veronii strain Aer12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4131231..4142472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5G97_RS19375 (AB5G97_19375) ampD 4131473..4132048 (-) 576 WP_376868698.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AB5G97_RS19380 (AB5G97_19380) - 4132179..4132649 (+) 471 WP_139709690.1 TIGR02281 family clan AA aspartic protease -
  AB5G97_RS19385 (AB5G97_19385) nadC 4132653..4133528 (+) 876 WP_181269589.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AB5G97_RS19390 (AB5G97_19390) - 4133844..4134284 (+) 441 WP_376868701.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AB5G97_RS19395 (AB5G97_19395) pilB 4134275..4135990 (+) 1716 WP_323910782.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  AB5G97_RS19400 (AB5G97_19400) pilC 4136231..4137472 (+) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  AB5G97_RS19405 (AB5G97_19405) pilD 4137534..4138406 (+) 873 WP_376868705.1 prepilin peptidase Machinery gene
  AB5G97_RS19410 (AB5G97_19410) coaE 4138420..4139034 (+) 615 WP_108541636.1 dephospho-CoA kinase -
  AB5G97_RS19415 (AB5G97_19415) zapD 4139072..4139794 (+) 723 WP_005336141.1 cell division protein ZapD -
  AB5G97_RS19420 (AB5G97_19420) yacG 4139804..4139998 (+) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  AB5G97_RS19425 (AB5G97_19425) mutT 4140076..4140480 (-) 405 WP_019444787.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45427.55 Da        Isoelectric Point: 9.7221

>NTDB_id=1056374 AB5G97_RS19400 WP_005336136.1 4136231..4137472(+) (pilC) [Aeromonas veronii strain Aer12]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1056374 AB5G97_RS19400 WP_005336136.1 4136231..4137472(+) (pilC) [Aeromonas veronii strain Aer12]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTAAACCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTAGCCAAGAAATCCCAGGGACTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGATATCGCCATCGTCTCACGC
CAGATCACCACCATGCTCTCCGCCGGCGTACCACTGGTGCAGAGTCTGCAGATCATCGCCCGCAGTCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACCGGTACCCCCATGTCGGAGGCGCTGCGCCGCCATCCTC
TCTATTTCGATGATCTCTATTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGTGCACTGGAGACCATCTACGACCGTATT
GCCACTTACCGGGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTCACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTTGGTGCCGAGC
TGCCGGTGTTCACCCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACGGCC
CTTGGCATCTTCCTTTACGTGCGGGCCTGGCGGGCCTCCCAGAAGGTAAAAGACAACACCGACAAGTTCGTCCTCACCAT
TCCGGTAGTCGGGATGATCCTGCACAAGGCGGCGATGGCCCGCTTTGCCCGCACCCTGTCTACCACCTTCTCCGCCGGTA
TTCCGCTGGTGGATGCGCTGATTTCGGCGGCTGGGGCCTCGGGCAACTATGTCTATCGCACCGCGGTCATGGCCATCCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTTGCAATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGTGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGTATGGTTATTGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6QCE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368

Multiple sequence alignment