Detailed information NTG1056375

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB5G97_RS19405
• Genome accession: NZ_CP170371
• Coordinates: 4137534..4138406 (+)
• Length: 290 a.a.
• NCBI ID: WP_376868705.1
• Uniprot ID: -
• Organism: Aeromonas veronii strain Aer12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4132534..4143406

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5G97_RS19385 (AB5G97_19385)	nadC	4132653..4133528 (+)	876	WP_181269589.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AB5G97_RS19390 (AB5G97_19390)	-	4133844..4134284 (+)	441	WP_376868701.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
AB5G97_RS19395 (AB5G97_19395)	pilB	4134275..4135990 (+)	1716	WP_323910782.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
AB5G97_RS19400 (AB5G97_19400)	pilC	4136231..4137472 (+)	1242	WP_005336136.1	type II secretion system F family protein	Machinery gene
AB5G97_RS19405 (AB5G97_19405)	pilD	4137534..4138406 (+)	873	WP_376868705.1	prepilin peptidase	Machinery gene
AB5G97_RS19410 (AB5G97_19410)	coaE	4138420..4139034 (+)	615	WP_108541636.1	dephospho-CoA kinase	-
AB5G97_RS19415 (AB5G97_19415)	zapD	4139072..4139794 (+)	723	WP_005336141.1	cell division protein ZapD	-
AB5G97_RS19420 (AB5G97_19420)	yacG	4139804..4139998 (+)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
AB5G97_RS19425 (AB5G97_19425)	mutT	4140076..4140480 (-)	405	WP_019444787.1	8-oxo-dGTP diphosphatase MutT	-
AB5G97_RS19430 (AB5G97_19430)	secA	4140555..4143275 (-)	2721	WP_376868708.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32107.36 Da
• Isoelectric Point: 6.5960

>NTDB_id=1056375 AB5G97_RS19405 WP_376868705.1 4137534..4138406(+) (pilD) [Aeromonas veronii strain Aer12]
MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFSPDEEATAPERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGHCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=1056375 AB5G97_RS19405 WP_376868705.1 4137534..4138406(+) (pilD) [Aeromonas veronii strain Aer12]
ATGACACTTCTTCTCGAGCTGGCTCACGGCTTGCCATGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTAGTGATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCGCAGCTACTTTT
CCCCCGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTCCCCCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGCTCTGGCTCAAAGGGCATTGCCGTGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTTGCCATGGTCATAACGCCGGGCTGGGGCA
CACTGGCCGCCCTATTGCTGACCTGGGTGCTGGTCGCCCTCACCTTCATCGATCTCGACAAGATGCTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAATCTGGCTGGTGGTTTCGTGCCGCTGGCGGATGCCGTGATTGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTAACCGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCTCTG
GTCGGTGCCGTGATCGGCATCAGCCTGATCGCCTTGCAAAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTTTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.839	98.621	0.6
pilD	Vibrio campbellii strain DS40M4	56.446	98.966	0.559
pilD	Acinetobacter baumannii D1279779	54.478	92.414	0.503
pilD	Acinetobacter nosocomialis M2	54.478	92.414	0.503
pilD	Neisseria gonorrhoeae MS11	49.624	91.724	0.455