Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACFDAU_RS02860 Genome accession   NZ_CP170197
Coordinates   579120..580349 (+) Length   409 a.a.
NCBI ID   WP_413438556.1    Uniprot ID   -
Organism   Sulfuriferula sp. GW1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 574120..585349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDAU_RS02845 (ACFDAU_02845) - 574923..575729 (+) 807 WP_413438553.1 inner membrane protein YpjD -
  ACFDAU_RS02850 (ACFDAU_02850) - 575802..577091 (+) 1290 WP_413438554.1 HlyC/CorC family transporter -
  ACFDAU_RS02855 (ACFDAU_02855) pilB 577179..578894 (+) 1716 WP_413438555.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACFDAU_RS02860 (ACFDAU_02860) pilC 579120..580349 (+) 1230 WP_413438556.1 type II secretion system F family protein Machinery gene
  ACFDAU_RS02865 (ACFDAU_02865) pilD 580383..581249 (+) 867 WP_413438557.1 prepilin peptidase Machinery gene
  ACFDAU_RS02870 (ACFDAU_02870) coaE 581252..581854 (+) 603 WP_413438558.1 dephospho-CoA kinase -
  ACFDAU_RS02875 (ACFDAU_02875) zapD 582036..582788 (+) 753 WP_413438559.1 cell division protein ZapD -
  ACFDAU_RS02880 (ACFDAU_02880) yacG 582785..582979 (+) 195 WP_413439489.1 DNA gyrase inhibitor YacG -
  ACFDAU_RS02885 (ACFDAU_02885) rpiA 582976..583635 (-) 660 WP_413439490.1 ribose-5-phosphate isomerase RpiA -
  ACFDAU_RS02890 (ACFDAU_02890) ilvA 583752..585278 (+) 1527 WP_413438560.1 threonine ammonia-lyase, biosynthetic -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44685.87 Da        Isoelectric Point: 10.2493

>NTDB_id=1055496 ACFDAU_RS02860 WP_413438556.1 579120..580349(+) (pilC) [Sulfuriferula sp. GW1]
MAVAKTTVTLKKEVPFVWEGVDKKGKKVKGEMNAGGEAVVNATLRRQGISVTKVKKRSGFGRGKKITEKDVALFTRQLAT
MMKSGVPLLQSFDIVSRGHANPSVQKLLIDIKSNIETGSSMSQAFAKHPLYFDQLYINLVNAGEQAGILDSVLDRLATYK
EKIMAIKGKIKSALFYPSAVLVVAFIITAVIMLFVIPAFKELFSSFGADLPAPTLVMMKISDIFVAYWWLIFSVIGGGFW
FFFYTWKRSKKMQAVMDRAMLKLPIFGPLIEKAAIARWTRTLSTMFAAGVPLVEALTSVAGAAGNQVFYEATQKIRAEVS
TGTSLTVAMQNSGIFPNMVQQMVSIGEESGALDSMLSKVADFFEREVDDAVDSLSSLMEPIIMVVLGTLIGGMVIAMYLP
IFKMGSVVS

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1055496 ACFDAU_RS02860 WP_413438556.1 579120..580349(+) (pilC) [Sulfuriferula sp. GW1]
ATGGCAGTAGCAAAAACAACAGTTACGCTCAAAAAAGAAGTTCCCTTTGTGTGGGAGGGCGTGGACAAAAAGGGCAAAAA
GGTCAAGGGTGAAATGAATGCGGGCGGCGAGGCCGTAGTGAATGCCACCCTGCGCCGCCAGGGTATTTCCGTTACCAAGG
TTAAAAAACGGAGTGGCTTCGGGCGGGGCAAGAAAATCACCGAAAAGGATGTGGCGTTGTTCACGCGGCAGCTTGCCACG
ATGATGAAATCAGGCGTGCCACTGCTGCAATCATTTGATATTGTGTCACGCGGTCATGCCAATCCATCCGTACAAAAACT
CCTGATCGACATTAAAAGCAATATTGAAACCGGCAGCAGTATGAGCCAGGCTTTTGCCAAGCATCCTTTATATTTTGACC
AGTTGTATATTAATTTGGTGAATGCGGGTGAACAGGCCGGTATTCTGGACAGCGTGCTGGACCGGTTGGCGACTTACAAA
GAAAAAATCATGGCCATCAAGGGCAAGATCAAGTCGGCCCTGTTTTATCCATCGGCAGTGCTGGTTGTGGCGTTCATCAT
CACGGCCGTGATTATGCTGTTCGTGATCCCGGCATTTAAAGAATTGTTCAGCAGCTTTGGCGCCGATTTGCCGGCCCCTA
CGCTGGTCATGATGAAAATATCCGATATTTTTGTGGCCTACTGGTGGTTGATCTTCAGTGTGATAGGTGGCGGGTTCTGG
TTTTTTTTCTACACATGGAAACGCTCCAAAAAAATGCAGGCAGTGATGGATCGAGCCATGCTCAAACTACCTATTTTCGG
TCCCTTGATTGAGAAAGCGGCGATTGCGCGCTGGACGCGCACCTTGTCCACCATGTTTGCGGCGGGCGTGCCACTTGTCG
AAGCATTGACGTCGGTTGCAGGCGCAGCCGGTAACCAAGTGTTTTATGAGGCGACGCAAAAGATCCGCGCCGAAGTAAGT
ACAGGTACCAGCCTGACCGTGGCCATGCAAAACAGCGGTATTTTTCCCAACATGGTTCAGCAGATGGTGTCCATCGGCGA
GGAATCCGGCGCGCTCGATTCGATGCTGAGCAAGGTGGCGGATTTTTTCGAGCGCGAGGTGGACGATGCCGTGGATTCCC
TCTCCAGCCTGATGGAACCGATCATCATGGTGGTGCTGGGTACACTGATTGGCGGCATGGTGATTGCCATGTATTTGCCT
ATTTTCAAAATGGGCAGCGTGGTTAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.556

96.822

0.538
  pilC Pseudomonas stutzeri DSM 10701

53.885

97.555

0.526
  pilC Acinetobacter baylyi ADP1

51.574

100

0.521
  pilC Acinetobacter baumannii D1279779

52.393

97.066

0.509
  pilG Neisseria gonorrhoeae MS11

50.124

98.533

0.494
  pilG Neisseria meningitidis 44/76-A

49.876

98.533

0.491
  pilC Vibrio cholerae strain A1552

40.441

99.756

0.403
  pilC Vibrio campbellii strain DS40M4

39.454

98.533

0.389
  pilC Thermus thermophilus HB27

37.192

99.267

0.369

Multiple sequence alignment