Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BCV09_RS02285 | Genome accession | NZ_CP170013 |
| Coordinates | 446567..446992 (-) | Length | 141 a.a. |
| NCBI ID | WP_016796129.1 | Uniprot ID | - |
| Organism | Vibrio cyclitrophicus strain 10N.286.54.C7 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 441567..451992
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCV09_RS02265 (BCV09_02265) | coaE | 442080..442694 (-) | 615 | WP_010435920.1 | dephospho-CoA kinase | - |
| BCV09_RS02270 (BCV09_02270) | pilD | 442697..443566 (-) | 870 | WP_016768203.1 | prepilin peptidase | Machinery gene |
| BCV09_RS02275 (BCV09_02275) | pilC | 443633..444862 (-) | 1230 | WP_016768204.1 | type II secretion system F family protein | Machinery gene |
| BCV09_RS02280 (BCV09_02280) | pilB | 444877..446562 (-) | 1686 | WP_029189239.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BCV09_RS02285 (BCV09_02285) | pilA | 446567..446992 (-) | 426 | WP_016796129.1 | pilin | Machinery gene |
| BCV09_RS02290 (BCV09_02290) | nadC | 447247..448137 (-) | 891 | WP_102402180.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BCV09_RS02295 (BCV09_02295) | ampD | 448221..448820 (+) | 600 | WP_065107040.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BCV09_RS02300 (BCV09_02300) | pdhR | 449302..450063 (+) | 762 | WP_016768209.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14672.71 Da Isoelectric Point: 4.3321
>NTDB_id=1054511 BCV09_RS02285 WP_016796129.1 446567..446992(-) (pilA) [Vibrio cyclitrophicus strain 10N.286.54.C7]
MNNKSKRTNQKGFTLIELMIVVAIIGVLSAIAVPAYKDYVAKSQASSALATLKSLVTPAELFIQENGDLTTLDELGIASG
ANSLGEIKIATQAASSAEISFTFADGALDTGVIAVTRSDTGWACTRTVSSLLQSVELEGCD
MNNKSKRTNQKGFTLIELMIVVAIIGVLSAIAVPAYKDYVAKSQASSALATLKSLVTPAELFIQENGDLTTLDELGIASG
ANSLGEIKIATQAASSAEISFTFADGALDTGVIAVTRSDTGWACTRTVSSLLQSVELEGCD
Nucleotide
Download Length: 426 bp
>NTDB_id=1054511 BCV09_RS02285 WP_016796129.1 446567..446992(-) (pilA) [Vibrio cyclitrophicus strain 10N.286.54.C7]
ATGAATAACAAAAGTAAAAGAACAAATCAGAAAGGTTTCACACTGATTGAATTGATGATTGTGGTAGCGATTATTGGCGT
GTTGTCTGCGATTGCTGTTCCTGCATATAAAGACTACGTAGCCAAAAGCCAAGCATCTTCAGCTTTAGCCACATTAAAAT
CTCTAGTAACACCTGCGGAGCTATTTATTCAAGAAAATGGCGACTTAACAACTCTAGACGAACTCGGAATAGCTTCAGGA
GCCAATTCTCTTGGAGAAATAAAAATAGCAACTCAAGCTGCATCTTCTGCAGAAATATCTTTTACCTTTGCTGATGGCGC
GTTAGACACTGGGGTTATTGCTGTGACGCGGTCAGATACAGGCTGGGCTTGTACTCGAACAGTGAGCTCTCTCCTTCAAT
CTGTTGAACTAGAAGGTTGTGATTAA
ATGAATAACAAAAGTAAAAGAACAAATCAGAAAGGTTTCACACTGATTGAATTGATGATTGTGGTAGCGATTATTGGCGT
GTTGTCTGCGATTGCTGTTCCTGCATATAAAGACTACGTAGCCAAAAGCCAAGCATCTTCAGCTTTAGCCACATTAAAAT
CTCTAGTAACACCTGCGGAGCTATTTATTCAAGAAAATGGCGACTTAACAACTCTAGACGAACTCGGAATAGCTTCAGGA
GCCAATTCTCTTGGAGAAATAAAAATAGCAACTCAAGCTGCATCTTCTGCAGAAATATCTTTTACCTTTGCTGATGGCGC
GTTAGACACTGGGGTTATTGCTGTGACGCGGTCAGATACAGGCTGGGCTTGTACTCGAACAGTGAGCTCTCTCCTTCAAT
CTGTTGAACTAGAAGGTTGTGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
50 |
100 |
0.504 |
| pilA | Pseudomonas aeruginosa PAK |
43.609 |
94.326 |
0.411 |
| pilA | Vibrio cholerae C6706 |
39.726 |
100 |
0.411 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.726 |
100 |
0.411 |
| pilA | Vibrio cholerae strain A1552 |
39.726 |
100 |
0.411 |
| comP | Acinetobacter baylyi ADP1 |
36.806 |
100 |
0.376 |
| pilA | Acinetobacter baumannii strain A118 |
38.235 |
96.454 |
0.369 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
36.957 |
97.872 |
0.362 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.06 |
95.035 |
0.362 |