Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BCV14_RS13095 Genome accession   NZ_CP170011
Coordinates   2978417..2979646 (+) Length   409 a.a.
NCBI ID   WP_102363585.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.54.E4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2973417..2984646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV14_RS13075 (BCV14_13075) ampD 2974417..2975016 (-) 600 WP_016790757.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  BCV14_RS13080 (BCV14_13080) nadC 2975100..2975990 (+) 891 WP_004738163.1 carboxylating nicotinate-nucleotide diphosphorylase -
  BCV14_RS13085 (BCV14_13085) pilA 2976244..2976717 (+) 474 WP_016790756.1 pilin Machinery gene
  BCV14_RS13090 (BCV14_13090) pilB 2976717..2978402 (+) 1686 WP_102363584.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BCV14_RS13095 (BCV14_13095) pilC 2978417..2979646 (+) 1230 WP_102363585.1 type II secretion system F family protein Machinery gene
  BCV14_RS13100 (BCV14_13100) pilD 2979713..2980582 (+) 870 WP_102363586.1 prepilin peptidase Machinery gene
  BCV14_RS13105 (BCV14_13105) coaE 2980585..2981199 (+) 615 WP_016794575.1 dephospho-CoA kinase -
  BCV14_RS13110 (BCV14_13110) zapD 2981226..2981966 (+) 741 WP_010435917.1 cell division protein ZapD -
  BCV14_RS13115 (BCV14_13115) yacG 2982048..2982245 (+) 198 WP_102363587.1 DNA gyrase inhibitor YacG -
  BCV14_RS13120 (BCV14_13120) rplS 2982517..2982870 (-) 354 WP_004735514.1 50S ribosomal protein L19 -
  BCV14_RS13125 (BCV14_13125) trmD 2982930..2983670 (-) 741 WP_010435912.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BCV14_RS13130 (BCV14_13130) rimM 2983697..2984251 (-) 555 WP_016768202.1 ribosome maturation factor RimM -
  BCV14_RS13135 (BCV14_13135) rpsP 2984276..2984524 (-) 249 WP_004410028.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45119.04 Da        Isoelectric Point: 10.1000

>NTDB_id=1054473 BCV14_RS13095 WP_102363585.1 2978417..2979646(+) (pilC) [Vibrio cyclitrophicus strain 10N.286.54.E4]
MSSKSKQSQLKNYHWKGINSSGKKVSGQSLALTELEVREKLKEQHIQIKKIKKKSISAITRITHRVKAKDITVLTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKAKVVKALIYPAMVVTVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLDLSHWMQAYSFYTALGIGATSL
VVHQLCQRSYSIRLSASRLVLRFPVLGGVMAKASIAKFSRTLSTSFSSGIPILMSLKTTAKTAGSLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1054473 BCV14_RS13095 WP_102363585.1 2978417..2979646(+) (pilC) [Vibrio cyclitrophicus strain 10N.286.54.E4]
ATGAGTAGTAAAAGCAAACAATCACAACTAAAAAACTACCATTGGAAGGGAATCAATAGTTCTGGTAAGAAAGTGTCTGG
GCAGAGCTTAGCGCTCACCGAATTAGAAGTGCGAGAGAAGCTCAAAGAGCAGCATATCCAAATTAAGAAAATCAAAAAGA
AAAGTATCTCCGCAATCACTCGCATAACACACCGAGTCAAAGCTAAGGACATCACCGTTTTAACTCGGCAACTCGCGACT
ATGTTGGCTACGGGTGTGCCTATTGTACAAGCCATCAAGCTAGTCTCAGACAATCACCGCAAAGCTGAAATGAAATCTAT
TTTGTCTCATATATGTAAGGGCGTTGAGGCAGGAACCCCGATATCAAAAGCAATGCGAACCGCAAGCCGCCACTTTGACG
ATCTCTACACCGACCTAGTCGCCACGGGAGAGCTTTCCGGCAACCTCGCACAAGTCTTTGAACGCTTAGCGACCTATCGT
GAAAAAAGTGAACAGTTAAAAGCTAAGGTGGTGAAAGCGCTTATCTATCCAGCAATGGTGGTCACGGTTGCGCTGACCGT
CTCCTATCTCATGCTCACCATGGTCATCCCAGAGTTTGAATCGATGTTTTCAGGCTTTGGTGCCGATCTTCCCTGGTTCA
CCCAACAAGTCCTCGACCTGTCTCATTGGATGCAAGCTTACAGTTTTTATACCGCCCTAGGCATCGGGGCTACCAGCCTG
GTTGTTCATCAACTGTGCCAACGTTCTTACTCGATTCGACTATCAGCCAGCCGCTTAGTGTTACGCTTTCCTGTACTTGG
TGGCGTAATGGCAAAGGCCTCTATCGCCAAGTTCAGCCGCACCTTATCAACCAGCTTTAGTTCTGGTATTCCGATTCTAA
TGAGCCTCAAAACTACAGCCAAAACCGCAGGCAGTCTGCATTATGAATCTGCGATCATCGAAGTACACCGAGAAACAGCC
GCGGGTATGCCGATGTATATTGCAATGCGCAATACCAATGCCTTCCCTGAAATGGTGTTACAGATGGTGATGATTGGTGA
AGAGTCAGGTAACCTTGATGATATGCTGAATAAAGTCGCTTCCATCTATGAGTTTGAAGTCGACAATACCGTCGACAACT
TAGGCAAAATTTTAGAGCCACTGATCATCGTGTTTTTAGGTACAGTTGTGGGTGGGCTTGTTGTCGCGATGTACTTACCA
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

79.25

97.8

0.775
  pilC Vibrio campbellii strain DS40M4

73.775

99.756

0.736
  pilC Acinetobacter baylyi ADP1

41.565

100

0.416
  pilC Legionella pneumophila strain ERS1305867

42.145

98.044

0.413
  pilC Acinetobacter baumannii D1279779

41.089

98.778

0.406
  pilC Pseudomonas stutzeri DSM 10701

40.347

98.778

0.399
  pilG Neisseria gonorrhoeae MS11

40.351

97.555

0.394
  pilG Neisseria meningitidis 44/76-A

40.1

97.555

0.391

Multiple sequence alignment