Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BCV14_RS13085 | Genome accession | NZ_CP170011 |
| Coordinates | 2976244..2976717 (+) | Length | 157 a.a. |
| NCBI ID | WP_016790756.1 | Uniprot ID | - |
| Organism | Vibrio cyclitrophicus strain 10N.286.54.E4 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2971244..2981717
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCV14_RS13070 (BCV14_13070) | pdhR | 2973174..2973935 (-) | 762 | WP_016768209.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| BCV14_RS13075 (BCV14_13075) | ampD | 2974417..2975016 (-) | 600 | WP_016790757.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BCV14_RS13080 (BCV14_13080) | nadC | 2975100..2975990 (+) | 891 | WP_004738163.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BCV14_RS13085 (BCV14_13085) | pilA | 2976244..2976717 (+) | 474 | WP_016790756.1 | pilin | Machinery gene |
| BCV14_RS13090 (BCV14_13090) | pilB | 2976717..2978402 (+) | 1686 | WP_102363584.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BCV14_RS13095 (BCV14_13095) | pilC | 2978417..2979646 (+) | 1230 | WP_102363585.1 | type II secretion system F family protein | Machinery gene |
| BCV14_RS13100 (BCV14_13100) | pilD | 2979713..2980582 (+) | 870 | WP_102363586.1 | prepilin peptidase | Machinery gene |
| BCV14_RS13105 (BCV14_13105) | coaE | 2980585..2981199 (+) | 615 | WP_016794575.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16745.10 Da Isoelectric Point: 5.8402
>NTDB_id=1054471 BCV14_RS13085 WP_016790756.1 2976244..2976717(+) (pilA) [Vibrio cyclitrophicus strain 10N.286.54.E4]
MNNKSKRTNQKGFTLIELMIVVAIIGILSAFAVPAYQDYTKKATLSEFPKAAAAVKMAVELCAHESASDGDTFKTNCVST
TDNIPAAFDLNSMNILAIGGTSSGAVDVRVKATAIKGPIAANETYVMTATYTTNGITWESKCYIDAALNNQQETYCP
MNNKSKRTNQKGFTLIELMIVVAIIGILSAFAVPAYQDYTKKATLSEFPKAAAAVKMAVELCAHESASDGDTFKTNCVST
TDNIPAAFDLNSMNILAIGGTSSGAVDVRVKATAIKGPIAANETYVMTATYTTNGITWESKCYIDAALNNQQETYCP
Nucleotide
Download Length: 474 bp
>NTDB_id=1054471 BCV14_RS13085 WP_016790756.1 2976244..2976717(+) (pilA) [Vibrio cyclitrophicus strain 10N.286.54.E4]
ATGAATAACAAAAGTAAAAGAACAAATCAGAAAGGCTTTACGCTGATTGAATTGATGATTGTAGTGGCGATTATTGGGAT
CTTATCGGCGTTTGCTGTTCCTGCTTATCAAGATTACACGAAAAAAGCGACTCTATCCGAATTTCCGAAAGCAGCCGCTG
CTGTAAAAATGGCTGTTGAATTATGTGCACATGAAAGTGCTTCGGATGGTGATACATTTAAAACAAATTGTGTAAGTACT
ACCGACAATATTCCCGCAGCATTTGACCTTAACAGTATGAACATATTAGCTATTGGAGGCACCAGTTCAGGAGCTGTAGA
TGTAAGAGTCAAAGCGACTGCAATCAAAGGGCCTATTGCTGCAAATGAAACTTACGTAATGACAGCAACGTATACTACAA
ATGGCATCACGTGGGAGAGTAAGTGTTATATAGACGCAGCATTGAACAATCAACAAGAGACCTACTGCCCATAA
ATGAATAACAAAAGTAAAAGAACAAATCAGAAAGGCTTTACGCTGATTGAATTGATGATTGTAGTGGCGATTATTGGGAT
CTTATCGGCGTTTGCTGTTCCTGCTTATCAAGATTACACGAAAAAAGCGACTCTATCCGAATTTCCGAAAGCAGCCGCTG
CTGTAAAAATGGCTGTTGAATTATGTGCACATGAAAGTGCTTCGGATGGTGATACATTTAAAACAAATTGTGTAAGTACT
ACCGACAATATTCCCGCAGCATTTGACCTTAACAGTATGAACATATTAGCTATTGGAGGCACCAGTTCAGGAGCTGTAGA
TGTAAGAGTCAAAGCGACTGCAATCAAAGGGCCTATTGCTGCAAATGAAACTTACGTAATGACAGCAACGTATACTACAA
ATGGCATCACGTGGGAGAGTAAGTGTTATATAGACGCAGCATTGAACAATCAACAAGAGACCTACTGCCCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio campbellii strain DS40M4 |
58.17 |
97.452 |
0.567 |
| pilA | Haemophilus influenzae 86-028NP |
39.333 |
95.541 |
0.376 |
| comP | Acinetobacter baylyi ADP1 |
40.426 |
89.809 |
0.363 |