Detailed information NTG1054474

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BCV14_RS13100
• Genome accession: NZ_CP170011
• Coordinates: 2979713..2980582 (+)
• Length: 289 a.a.
• NCBI ID: WP_102363586.1
• Uniprot ID: -
• Organism: Vibrio cyclitrophicus strain 10N.286.54.E4
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2974713..2985582

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV14_RS13080 (BCV14_13080)	nadC	2975100..2975990 (+)	891	WP_004738163.1	carboxylating nicotinate-nucleotide diphosphorylase	-
BCV14_RS13085 (BCV14_13085)	pilA	2976244..2976717 (+)	474	WP_016790756.1	pilin	Machinery gene
BCV14_RS13090 (BCV14_13090)	pilB	2976717..2978402 (+)	1686	WP_102363584.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BCV14_RS13095 (BCV14_13095)	pilC	2978417..2979646 (+)	1230	WP_102363585.1	type II secretion system F family protein	Machinery gene
BCV14_RS13100 (BCV14_13100)	pilD	2979713..2980582 (+)	870	WP_102363586.1	prepilin peptidase	Machinery gene
BCV14_RS13105 (BCV14_13105)	coaE	2980585..2981199 (+)	615	WP_016794575.1	dephospho-CoA kinase	-
BCV14_RS13110 (BCV14_13110)	zapD	2981226..2981966 (+)	741	WP_010435917.1	cell division protein ZapD	-
BCV14_RS13115 (BCV14_13115)	yacG	2982048..2982245 (+)	198	WP_102363587.1	DNA gyrase inhibitor YacG	-
BCV14_RS13120 (BCV14_13120)	rplS	2982517..2982870 (-)	354	WP_004735514.1	50S ribosomal protein L19	-
BCV14_RS13125 (BCV14_13125)	trmD	2982930..2983670 (-)	741	WP_010435912.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BCV14_RS13130 (BCV14_13130)	rimM	2983697..2984251 (-)	555	WP_016768202.1	ribosome maturation factor RimM	-
BCV14_RS13135 (BCV14_13135)	rpsP	2984276..2984524 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32529.66 Da
• Isoelectric Point: 7.6347

>NTDB_id=1054474 BCV14_RS13100 WP_102363586.1 2979713..2980582(+) (pilD) [Vibrio cyclitrophicus strain 10N.286.54.E4]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRAI
DNIPVLSWLFLKGKCHSCTNPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPTIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=1054474 BCV14_RS13100 WP_102363586.1 2979713..2980582(+) (pilD) [Vibrio cyclitrophicus strain 10N.286.54.E4]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATGATGGAGCGAGAGTGGCAACAAGAGTGCTCGGAATATTTCTCTCAATATAAAA
TTCCAGCACCAGAAGGAAAGTTTAATCTCAGCATTCCTCGCTCTACTTGCCCTAAGTGTAAAACCCAACTGAGAGCAATC
GACAACATCCCTGTATTAAGCTGGTTATTCCTAAAAGGTAAGTGCCACAGTTGTACTAACCCCATCAGCGCCCGTTATCC
CTTGGTCGAACTGCTTACAGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCTCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTACTGCCGGATCAAATTACCTTACCT
TTGGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAACGATCATCCTTCTATCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGACAAAGCTTTCCCATTTGGGCCCTATCTAGCCATTGC
TGGTTGGGTAAGTCTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	73.702	100	0.737
pilD	Vibrio cholerae strain A1552	69.097	99.654	0.689
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	49.035	89.619	0.439