Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BCV29_RS10295 Genome accession   NZ_CP170001
Coordinates   2293355..2294467 (+) Length   370 a.a.
NCBI ID   WP_102312894.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.55.B4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2288355..2299467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV29_RS10275 (BCV29_10275) rsmB 2289210..2290490 (-) 1281 WP_102312892.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  BCV29_RS10280 (BCV29_10280) fmt 2290610..2291575 (-) 966 WP_010433333.1 methionyl-tRNA formyltransferase -
  BCV29_RS10285 (BCV29_10285) def 2291614..2292126 (-) 513 WP_010433336.1 peptide deformylase -
  BCV29_RS10290 (BCV29_10290) - 2292267..2293358 (+) 1092 WP_102312893.1 LysM peptidoglycan-binding domain-containing protein -
  BCV29_RS10295 (BCV29_10295) dprA 2293355..2294467 (+) 1113 WP_102312894.1 DNA-processing protein DprA Machinery gene
  BCV29_RS10300 (BCV29_10300) - 2294471..2294947 (+) 477 WP_004735774.1 DUF494 family protein -
  BCV29_RS10305 (BCV29_10305) - 2294960..2295529 (+) 570 WP_004735775.1 type I DNA topoisomerase -
  BCV29_RS10310 (BCV29_10310) - 2295598..2296728 (-) 1131 WP_010433347.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  BCV29_RS10315 (BCV29_10315) purE 2296734..2297219 (-) 486 WP_004735777.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  BCV29_RS10320 (BCV29_10320) - 2297415..2297972 (+) 558 WP_010433350.1 L-threonylcarbamoyladenylate synthase -
  BCV29_RS10325 (BCV29_10325) hemF 2297992..2298909 (+) 918 WP_016767527.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40159.95 Da        Isoelectric Point: 6.8795

>NTDB_id=1054297 BCV29_RS10295 WP_102312894.1 2293355..2294467(+) (dprA) [Vibrio cyclitrophicus strain 10N.286.55.B4]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPLNIVGYSSQQLQALGLSAKQIAYLREQAPREVEACLEWQARQPNHHII
TPNCSHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPSLFEPTLSMGENEQLPFPQLF
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1054297 BCV29_RS10295 WP_102312894.1 2293355..2294467(+) (dprA) [Vibrio cyclitrophicus strain 10N.286.55.B4]
GTGAATGAGCAACAACTGAGTGCTTGGTTAACTCTAAGTTTTGTTCCGCAATTGGGTGGCAAGCGCCTTTCTCGACTGCT
GAGTATTGATTCTCCTTTGAATATTGTTGGTTACTCAAGTCAGCAACTGCAAGCGCTTGGTTTGTCTGCCAAGCAAATTG
CCTATCTAAGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCCTAGAGTGGCAAGCAAGACAACCCAACCATCACATCATT
ACCCCGAATTGCTCGCATTATCCCAAACTGCTGAATGAGACCGCCTCTGCGCCAAGCGTGCTTTTTGTTAAAGGTCACGT
TGAAAAGCTGATTGAGCCTCAAATCGCTATGGTCGGCAGTCGCAATGCCAGTCTCGAAGGGCTGCAAACCGCGAAGTCCT
TCGCCAAAGAGTTCGTCCAAAACGGTTTGATTGTCACCAGTGGCTTAGCGCTCGGTATTGATGGTTATGCTCATGATGGT
GCTCTAGATAAAGGTGGGGAAACTTTTGCTGTGTTGGGTTCTGGCTTGGATTCCATTTATCCTGCGCGACACAGAAATTT
AGCCGATAGGATCTGTGAAAATGGTGCGTTGATTTCAGAGTTTCGCCCAAGTGCCAAACCACGACCTGAACATTTCCCTC
GCCGTAACCGTATTATAAGTGGGTTATCGCTCGGAACCTTGGTGGTTGAAGCGGCTGAGAAGAGTGGTTCTTTGATTACA
GCTCGCTATGCCATGGAGCAAGGCCGAGAGGTGTTTGCGCTTCCTGGCTCTATTCATAACCCAACCAGTCGAGGAGGAAA
TAGCTTAATCAAAGCTGGAGCATGCTTAGTACAGAGTGCACAAGATGTTCTGATTGAGATAAAGAGTCTGCTAGACTGGT
CTATCGATCAGCAACCCAGCTTGTTCGAACCTACGCTCAGTATGGGGGAAAATGAACAATTGCCATTTCCACAGCTGTTC
GCTAACGTAGGGTTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

67.48

99.73

0.673
  dprA Vibrio cholerae strain A1552

58.333

100

0.586
  dprA Glaesserella parasuis strain SC1401

47.581

100

0.478
  dprA Legionella pneumophila strain ERS1305867

43.681

98.378

0.43
  dprA Neisseria meningitidis strain C311

38.791

100

0.416
  dprA Neisseria meningitidis MC58

38.791

100

0.416
  dprA Haemophilus influenzae Rd KW20

44.311

90.27

0.4
  dprA Neisseria gonorrhoeae strain FA1090

37.468

100

0.4
  dprA Neisseria gonorrhoeae MS11

37.468

100

0.4
  dprA Acinetobacter baumannii strain A118

41.718

88.108

0.368
  dprA Acinetobacter baumannii D1279779

41.411

88.108

0.365

Multiple sequence alignment