Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ACEZDF_RS10110 | Genome accession | NZ_CP169539 |
| Coordinates | 2225127..2225411 (-) | Length | 94 a.a. |
| NCBI ID | WP_054578035.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain BR53 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2220127..2230411
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEZDF_RS10085 (ACEZDF_10085) | - | 2220625..2221839 (+) | 1215 | WP_053303263.1 | pyridoxal phosphate-dependent aminotransferase | - |
| ACEZDF_RS10090 (ACEZDF_10090) | yfbR | 2221930..2222514 (+) | 585 | WP_017634778.1 | 5'-deoxynucleotidase | - |
| ACEZDF_RS10095 (ACEZDF_10095) | - | 2222530..2223852 (+) | 1323 | WP_053303264.1 | anti-phage deoxyguanosine triphosphatase | - |
| ACEZDF_RS10100 (ACEZDF_10100) | - | 2223859..2224473 (-) | 615 | WP_025766956.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ACEZDF_RS10105 (ACEZDF_10105) | rrtA | 2224477..2225028 (+) | 552 | WP_005382331.1 | rhombosortase | - |
| ACEZDF_RS10110 (ACEZDF_10110) | comEA | 2225127..2225411 (-) | 285 | WP_054578035.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| ACEZDF_RS10115 (ACEZDF_10115) | ppiD | 2225667..2227526 (-) | 1860 | WP_054577998.1 | peptidylprolyl isomerase | - |
| ACEZDF_RS10120 (ACEZDF_10120) | - | 2227728..2228000 (-) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10322.94 Da Isoelectric Point: 5.1297
>NTDB_id=1051947 ACEZDF_RS10110 WP_054578035.1 2225127..2225411(-) (comEA) [Vibrio alginolyticus strain BR53]
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGDKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGDKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=1051947 ACEZDF_RS10110 WP_054578035.1 2225127..2225411(-) (comEA) [Vibrio alginolyticus strain BR53]
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGATAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATA
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGATAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATA
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
87.234 |
100 |
0.872 |
| comEA | Vibrio campbellii strain DS40M4 |
74.737 |
100 |
0.755 |
| comEA | Vibrio cholerae C6706 |
60.87 |
97.872 |
0.596 |
| comEA | Vibrio cholerae strain A1552 |
60.87 |
97.872 |
0.596 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
50.617 |
86.17 |
0.436 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
59.677 |
65.957 |
0.394 |
| comEA | Legionella pneumophila str. Paris |
36.842 |
100 |
0.372 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.842 |
100 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comEA/celA/cilE | Streptococcus pneumoniae TIGR4 |
38.202 |
94.681 |
0.362 |