Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACEVBK_RS03405 Genome accession   NZ_CP169531
Coordinates   694383..695609 (-) Length   408 a.a.
NCBI ID   WP_375057195.1    Uniprot ID   -
Organism   Zobellella sp. DQSA1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 689383..700609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEVBK_RS03380 (ACEVBK_03380) mutY 689501..690565 (-) 1065 WP_375058505.1 A/G-specific adenine glycosylase -
  ACEVBK_RS03385 (ACEVBK_03385) - 690838..692016 (+) 1179 WP_375057191.1 PLP-dependent aminotransferase family protein -
  ACEVBK_RS03390 (ACEVBK_03390) trmB 692170..692886 (+) 717 WP_375057192.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACEVBK_RS03395 (ACEVBK_03395) coaE 692894..693499 (-) 606 WP_375057193.1 dephospho-CoA kinase -
  ACEVBK_RS03400 (ACEVBK_03400) pilD 693496..694350 (-) 855 WP_375057194.1 prepilin peptidase Machinery gene
  ACEVBK_RS03405 (ACEVBK_03405) pilC 694383..695609 (-) 1227 WP_375057195.1 type II secretion system F family protein Machinery gene
  ACEVBK_RS03410 (ACEVBK_03410) pilB 695675..697390 (-) 1716 WP_375057196.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACEVBK_RS03415 (ACEVBK_03415) - 697394..697879 (-) 486 WP_375057197.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACEVBK_RS03420 (ACEVBK_03420) nadC 698203..699045 (-) 843 WP_375058506.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACEVBK_RS03425 (ACEVBK_03425) - 699102..699614 (-) 513 WP_375057198.1 TIGR02281 family clan AA aspartic protease -
  ACEVBK_RS03430 (ACEVBK_03430) ampD 699698..700252 (+) 555 WP_375057199.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44975.14 Da        Isoelectric Point: 10.3375

>NTDB_id=1051810 ACEVBK_RS03405 WP_375057195.1 694383..695609(-) (pilC) [Zobellella sp. DQSA1]
MPTTKSYKVHPYKWEGVNRRGQKVSGFIQAINAQAVKRELQRQGVNATRVRRKNQSLLARCKDTITPMDIAVITRQIATM
LGAGVPLVQTLQIISRSYQKSSIRELTGLIASDVEGGTPLSDALKKFPRQFDGLYCDLVRSGEQTGALEHIFDQVAIYRE
KAEALKSKIKKTMFYPTMVILVAIAVTSILLLFVIPQFEDIFAGFGAALPAFTQMVINLSRWMQASWLYILAGVVATAFL
YVRAWRLSQKVRDATDRATLRIPVVGTILHKAALARFARTLATTFSAGIPLVEGLLSSAGAAGNVVYRKAIMQMRSEVIA
GMQMNLAMRATRLFPDMVVQMVMIGEESGAIDDMMNKVAIIYEREVDDAVDGLTSLIEPIIMVVLGILVGGLVIAMYLPI
FNLGSVIR

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1051810 ACEVBK_RS03405 WP_375057195.1 694383..695609(-) (pilC) [Zobellella sp. DQSA1]
ATGCCAACGACCAAAAGCTACAAGGTACATCCCTATAAGTGGGAAGGCGTGAACCGTCGTGGGCAGAAGGTGTCCGGCTT
TATCCAGGCGATTAACGCACAGGCGGTCAAACGGGAACTGCAACGCCAGGGGGTTAACGCCACCCGTGTGCGACGTAAAA
ACCAGAGCCTGCTCGCCCGCTGCAAAGATACCATCACGCCGATGGACATCGCCGTGATCACCCGCCAGATAGCCACCATG
CTGGGGGCCGGCGTTCCCCTGGTGCAAACCCTGCAAATCATTTCCCGTTCCTACCAGAAAAGCAGCATTCGCGAACTCAC
CGGCCTGATAGCCTCGGATGTGGAAGGCGGCACCCCGCTCTCGGACGCCCTGAAAAAGTTCCCCCGCCAGTTCGATGGCC
TCTATTGCGACCTGGTGCGCTCGGGCGAACAGACCGGGGCGCTGGAGCATATATTTGACCAAGTGGCCATTTATCGGGAA
AAAGCCGAAGCGCTCAAGTCCAAGATCAAAAAAACCATGTTCTACCCGACCATGGTGATACTGGTGGCCATTGCCGTGAC
CTCCATCTTGCTGCTGTTCGTCATACCGCAGTTCGAGGACATTTTTGCCGGTTTTGGCGCCGCCCTGCCCGCCTTTACCC
AGATGGTGATCAACCTGTCGCGCTGGATGCAGGCTTCCTGGCTGTATATTCTGGCCGGGGTGGTGGCAACGGCATTCCTC
TACGTGCGCGCCTGGCGCCTGTCCCAGAAGGTGAGAGATGCCACCGACCGCGCGACCCTGCGTATCCCGGTGGTAGGCAC
CATACTGCACAAGGCCGCCCTGGCCCGCTTTGCCCGCACCCTGGCCACCACCTTCTCCGCCGGCATTCCGCTGGTGGAGG
GGCTGCTCTCCTCGGCCGGCGCCGCCGGCAACGTGGTATATCGCAAGGCCATCATGCAGATGCGCAGCGAGGTCATTGCC
GGCATGCAGATGAACCTGGCCATGCGCGCCACCCGGCTGTTCCCCGATATGGTGGTGCAAATGGTGATGATAGGTGAGGA
GTCCGGCGCCATCGACGACATGATGAACAAGGTGGCCATCATCTACGAGCGGGAAGTAGACGACGCGGTAGACGGCCTCA
CCAGCCTGATAGAGCCCATCATCATGGTGGTGCTGGGTATTCTGGTTGGCGGCCTGGTCATTGCCATGTATCTTCCCATC
TTCAATTTGGGTAGTGTTATCCGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.846

98.775

0.532
  pilC Acinetobacter baumannii D1279779

50.735

100

0.507
  pilC Acinetobacter baylyi ADP1

49.877

99.265

0.495
  pilC Legionella pneumophila strain ERS1305867

48.99

97.059

0.475
  pilC Vibrio cholerae strain A1552

46.437

99.755

0.463
  pilC Vibrio campbellii strain DS40M4

45.614

97.794

0.446
  pilG Neisseria meningitidis 44/76-A

42.184

98.775

0.417
  pilG Neisseria gonorrhoeae MS11

42.184

98.775

0.417
  pilC Thermus thermophilus HB27

37.94

97.549

0.37

Multiple sequence alignment