Detailed information NTG1051809

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACEVBK_RS03400
• Genome accession: NZ_CP169531
• Coordinates: 693496..694350 (-)
• Length: 284 a.a.
• NCBI ID: WP_375057194.1
• Uniprot ID: -
• Organism: Zobellella sp. DQSA1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 688496..699350

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEVBK_RS03375 (ACEVBK_03375)	-	689226..689501 (-)	276	WP_375057190.1	oxidative damage protection protein	-
ACEVBK_RS03380 (ACEVBK_03380)	mutY	689501..690565 (-)	1065	WP_375058505.1	A/G-specific adenine glycosylase	-
ACEVBK_RS03385 (ACEVBK_03385)	-	690838..692016 (+)	1179	WP_375057191.1	PLP-dependent aminotransferase family protein	-
ACEVBK_RS03390 (ACEVBK_03390)	trmB	692170..692886 (+)	717	WP_375057192.1	tRNA (guanosine(46)-N7)-methyltransferase TrmB	-
ACEVBK_RS03395 (ACEVBK_03395)	coaE	692894..693499 (-)	606	WP_375057193.1	dephospho-CoA kinase	-
ACEVBK_RS03400 (ACEVBK_03400)	pilD	693496..694350 (-)	855	WP_375057194.1	prepilin peptidase	Machinery gene
ACEVBK_RS03405 (ACEVBK_03405)	pilC	694383..695609 (-)	1227	WP_375057195.1	type II secretion system F family protein	Machinery gene
ACEVBK_RS03410 (ACEVBK_03410)	pilB	695675..697390 (-)	1716	WP_375057196.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACEVBK_RS03415 (ACEVBK_03415)	-	697394..697879 (-)	486	WP_375057197.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ACEVBK_RS03420 (ACEVBK_03420)	nadC	698203..699045 (-)	843	WP_375058506.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 284 a.a.
• Molecular weight: 31594.81 Da
• Isoelectric Point: 8.3792

>NTDB_id=1051809 ACEVBK_RS03400 WP_375057194.1 693496..694350(-) (pilD) [Zobellella sp. DQSA1]
MALLLDNPVLLYSLIMLLGLLVGSFLNVVIHRLPLMLQRDWQRECAELNGRPQPEETSFNLCTPRSRCPHCHHQLGVLDN
IPLLSWLWLKGRCRYCSTPIARRYPLVELAAAALAGLALWRFGASPQLLAALLFSWALLCMALIDMEHLLLPDNLTLPLL
WLGLLLNINALFVPLSSAVLGAAFGYGMLWSLYWLFKLATGKEGMGYGDFKLLAAIGAWFGWQSLLPVLLLASFTGAALG
LGLMALRRLGEDRVLPFGPALALGGWLYLIWGQQAVGMYWRWAL

Nucleotide

• Length: 855 bp

>NTDB_id=1051809 ACEVBK_RS03400 WP_375057194.1 693496..694350(-) (pilD) [Zobellella sp. DQSA1]
ATGGCGCTATTGCTCGACAATCCCGTTTTACTGTATTCCCTGATCATGCTGCTGGGCCTGCTGGTGGGCAGCTTTCTCAA
CGTGGTCATCCACCGCCTGCCGCTGATGCTTCAGCGCGACTGGCAGCGGGAATGCGCCGAACTGAACGGCCGGCCCCAGC
CCGAAGAGACGTCGTTTAACCTGTGCACCCCCCGTTCCCGCTGCCCCCATTGCCATCATCAACTGGGCGTACTCGACAAT
ATTCCGCTGCTCAGCTGGCTCTGGCTGAAAGGCCGCTGCCGCTACTGCAGCACCCCCATCGCCAGACGCTACCCGCTGGT
GGAACTGGCGGCGGCAGCCCTGGCCGGGCTGGCCCTGTGGCGCTTCGGTGCCAGCCCGCAACTGCTGGCGGCACTGCTGT
TCAGCTGGGCCTTGCTGTGCATGGCGCTGATCGACATGGAACACCTGCTGCTGCCCGACAACCTCACCCTGCCGCTGCTG
TGGCTGGGCCTGTTGCTCAATATCAACGCCCTCTTCGTCCCCCTCAGCAGCGCCGTGCTGGGCGCCGCCTTCGGCTACGG
CATGTTATGGAGCCTGTATTGGCTGTTCAAACTGGCCACCGGCAAGGAGGGCATGGGTTACGGCGACTTCAAGCTGCTGG
CGGCCATCGGCGCCTGGTTTGGCTGGCAAAGCCTGCTGCCGGTACTGCTGCTGGCATCCTTTACCGGCGCCGCCCTGGGG
TTGGGGCTGATGGCCCTGCGTCGCCTGGGCGAAGACCGGGTACTGCCCTTCGGTCCGGCCCTGGCCCTGGGCGGTTGGTT
ATATTTGATATGGGGCCAGCAAGCGGTTGGCATGTACTGGAGGTGGGCACTGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-122)

• Type IV leader peptidase family (Peptidase_A24) (133-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.65	100	0.5
pilD	Vibrio campbellii strain DS40M4	46.996	99.648	0.468
pilD	Neisseria gonorrhoeae MS11	47.266	90.141	0.426
pilD	Acinetobacter nosocomialis M2	43.06	98.944	0.426
pilD	Acinetobacter baumannii D1279779	42.349	98.944	0.419