Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACETWS_RS05765 Genome accession   NZ_CP169073
Coordinates   1261313..1262530 (-) Length   405 a.a.
NCBI ID   WP_016445610.1    Uniprot ID   A0AAJ1HZR1
Organism   Delftia lacustris strain ZWP15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1256313..1267530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETWS_RS05735 (ACETWS_05735) - 1257144..1258100 (+) 957 WP_374006834.1 ATP-binding protein -
  ACETWS_RS05740 (ACETWS_05740) mutT 1258151..1258657 (+) 507 WP_043789746.1 8-oxo-dGTP diphosphatase MutT -
  ACETWS_RS05745 (ACETWS_05745) - 1258668..1258922 (-) 255 WP_016445606.1 DNA gyrase inhibitor YacG -
  ACETWS_RS05750 (ACETWS_05750) zapD 1258922..1259677 (-) 756 WP_016445607.1 cell division protein ZapD -
  ACETWS_RS05755 (ACETWS_05755) coaE 1259767..1260405 (-) 639 WP_016445608.1 dephospho-CoA kinase -
  ACETWS_RS05760 (ACETWS_05760) pilD 1260420..1261313 (-) 894 WP_374006835.1 A24 family peptidase Machinery gene
  ACETWS_RS05765 (ACETWS_05765) pilC 1261313..1262530 (-) 1218 WP_016445610.1 type II secretion system F family protein Machinery gene
  ACETWS_RS05770 (ACETWS_05770) pilB 1262569..1264311 (-) 1743 WP_017405527.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACETWS_RS05780 (ACETWS_05780) - 1264548..1265477 (-) 930 WP_374008364.1 polyprenyl synthetase family protein -
  ACETWS_RS05785 (ACETWS_05785) rplU 1265708..1266019 (+) 312 WP_012207284.1 50S ribosomal protein L21 -
  ACETWS_RS05790 (ACETWS_05790) rpmA 1266035..1266292 (+) 258 WP_012207283.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44446.30 Da        Isoelectric Point: 9.3922

>NTDB_id=1049777 ACETWS_RS05765 WP_016445610.1 1261313..1262530(-) (pilC) [Delftia lacustris strain ZWP15]
MATAASKGIKEFVFEWEGKDRNGKIIRGETRAGGINQVQAMLRRQGVLPSKIKKRRTRGGKRIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTRLLADIRADVETGTSLNAAYRKHPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIKSALMYPISVIVVAFIVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMGISDVFVQWWWLIFGVIGGGLYFFM
QAWKRNERMQQFMDRTLLKVPVFGVLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYANATEKIQQEVSTGT
SLTVAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1049777 ACETWS_RS05765 WP_016445610.1 1261313..1262530(-) (pilC) [Delftia lacustris strain ZWP15]
ATGGCCACAGCCGCGTCCAAGGGAATCAAGGAATTTGTCTTCGAATGGGAAGGCAAGGATCGCAACGGCAAGATCATCCG
AGGCGAGACCCGGGCCGGGGGCATCAACCAGGTCCAGGCCATGCTGCGCCGCCAGGGCGTGCTGCCCAGCAAGATCAAGA
AGCGCCGCACACGCGGCGGCAAGAGGATCAAGCCCAAGGACATTGCGCTGTTCACCCGCCAGATGGCAACGATGATGAAG
GCGGGCGTCCCGCTGCTTCAGGCCTTCGACATTGTCGGACGGGGTAACACCAACCCCAGCGTGACGCGCCTTCTGGCCGA
TATTCGCGCCGACGTGGAGACCGGCACCTCGCTGAACGCGGCCTATCGCAAGCACCCCATGTACTTCGATAGCCTCTACT
GCAATCTGGTGGAGGCGGGCGAAGCGGCCGGTATCCTGGAAGCCCTGCTGGACCGCCTGGCCACGTACATGGAGAAGACC
GAGGCCATCAAGTCCAAGATCAAATCGGCGCTGATGTACCCGATCTCGGTCATCGTCGTGGCCTTCATCGTCGTGACCAT
CATCATGATTTTCGTGATCCCGGCCTTCAAGGAAGTGTTCACCTCGTTCGGCGCCGACCTGCCGGCACCGACGCTGTTCG
TGATGGGCATCAGCGATGTCTTTGTCCAATGGTGGTGGTTGATCTTCGGCGTGATTGGCGGCGGTCTCTACTTCTTCATG
CAGGCCTGGAAGCGCAACGAGCGCATGCAGCAATTCATGGACCGTACGCTGCTGAAGGTGCCGGTCTTTGGCGTGCTGAT
CGAGAAATCCTGCGTCGCACGCTGGACGCGCACGCTATCGACCATGTTTGCCGCGGGTGTCCCATTGGTCGAGGCACTGG
ATTCTGTCGGCGGCGCATCCGGCAATGCCGTGTATGCCAATGCCACGGAAAAGATCCAGCAGGAAGTCTCCACCGGCACC
AGTCTCACCGTGGCTATGACCAATGCCAATGTCTTTCCCTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAATCCGG
CTCCATCGACCACATGCTGGGCAAGGCGGCCGATTTCTATGAGGAAGAGGTCGATGACATGGTGGCTGGCCTGTCCAGCC
TGATGGAGCCCATCATCATTGTTTTCCTGGGCACCCTCATCGGCGGCATCGTGGTTTCGATGTATCTGCCCATCTTCAAG
CTGGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.198

99.753

0.551
  pilG Neisseria gonorrhoeae MS11

50.25

98.765

0.496
  pilG Neisseria meningitidis 44/76-A

50

98.765

0.494
  pilC Legionella pneumophila strain ERS1305867

50.253

97.778

0.491
  pilC Acinetobacter baylyi ADP1

49.246

98.272

0.484
  pilC Acinetobacter baumannii D1279779

47.859

98.025

0.469
  pilC Vibrio cholerae strain A1552

40.302

98.025

0.395
  pilC Vibrio campbellii strain DS40M4

39.295

98.025

0.385
  pilC Thermus thermophilus HB27

37.5

98.765

0.37

Multiple sequence alignment