Detailed information NTG1049776

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACETWS_RS05760
• Genome accession: NZ_CP169073
• Coordinates: 1260420..1261313 (-)
• Length: 297 a.a.
• NCBI ID: WP_374006835.1
• Uniprot ID: -
• Organism: Delftia lacustris strain ZWP15
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1255420..1266313

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACETWS_RS05730 (ACETWS_05730)	argJ	1255746..1256978 (+)	1233	WP_374006833.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
ACETWS_RS05735 (ACETWS_05735)	-	1257144..1258100 (+)	957	WP_374006834.1	ATP-binding protein	-
ACETWS_RS05740 (ACETWS_05740)	mutT	1258151..1258657 (+)	507	WP_043789746.1	8-oxo-dGTP diphosphatase MutT	-
ACETWS_RS05745 (ACETWS_05745)	-	1258668..1258922 (-)	255	WP_016445606.1	DNA gyrase inhibitor YacG	-
ACETWS_RS05750 (ACETWS_05750)	zapD	1258922..1259677 (-)	756	WP_016445607.1	cell division protein ZapD	-
ACETWS_RS05755 (ACETWS_05755)	coaE	1259767..1260405 (-)	639	WP_016445608.1	dephospho-CoA kinase	-
ACETWS_RS05760 (ACETWS_05760)	pilD	1260420..1261313 (-)	894	WP_374006835.1	A24 family peptidase	Machinery gene
ACETWS_RS05765 (ACETWS_05765)	pilC	1261313..1262530 (-)	1218	WP_016445610.1	type II secretion system F family protein	Machinery gene
ACETWS_RS05770 (ACETWS_05770)	pilB	1262569..1264311 (-)	1743	WP_017405527.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACETWS_RS05780 (ACETWS_05780)	-	1264548..1265477 (-)	930	WP_374008364.1	polyprenyl synthetase family protein	-
ACETWS_RS05785 (ACETWS_05785)	rplU	1265708..1266019 (+)	312	WP_012207284.1	50S ribosomal protein L21	-
ACETWS_RS05790 (ACETWS_05790)	rpmA	1266035..1266292 (+)	258	WP_012207283.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 31862.40 Da
• Isoelectric Point: 6.7239

>NTDB_id=1049776 ACETWS_RS05760 WP_374006835.1 1260420..1261313(-) (pilD) [Delftia lacustris strain ZWP15]
MVLELWMQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAEEHSSSSATPPPATAPPPAEAPLSLSRPRSRCPH
CGHAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCAAQWGITPTGAAWCLFSAALLSLALIDWDTTL
LPDDITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPII
LISSVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAALGL

Nucleotide

• Length: 894 bp

>NTDB_id=1049776 ACETWS_RS05760 WP_374006835.1 1260420..1261313(-) (pilD) [Delftia lacustris strain ZWP15]
ATGGTTTTGGAACTCTGGATGCAGGCTGCATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
GCATAGGCTGCCCCGCATGATGGAGCAGCAATGGAATGCGGAATGCGCCCAATGGGCGGAAGAGCACTCTTCATCCTCCG
CCACGCCACCGCCCGCCACAGCGCCGCCGCCTGCCGAGGCGCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCAT
TGCGGCCATGCCATCCACTGGTACGAAAACATTCCCGTGCTCAGTTATCTGGCGCTGCGGGGCCGGTGCTCCGAATGCAA
GGCGTCGATCAGCATCCGCTATCCGCTGGTGGAATTGGCCTGCGCCGCGCTGTTTGCCTACTGTGCGGCGCAATGGGGCA
TCACGCCCACAGGCGCTGCCTGGTGCCTTTTCAGTGCGGCCTTGCTGAGCCTGGCATTGATCGACTGGGACACCACACTG
CTTCCCGACGACATCACCCTGCCCTTGCTGTGGGCCGGACTGCTGTCGTCGGCGCTGCACTGGACCGCCGTGCCTCTGGC
CGACGCGGTATGGGGCGCTGCAGCGGGCTATCTCTCGCTGTGGCTGGTTTACTGGGCCTTCAAGCTGGCCACCGGCAAGG
AAGGCATGGGCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCACTCGTGCCCATCATC
CTGATCTCGTCGGTGATTGGCGCCATCGTGGGCATCGCGTTGAAGATCAACAGCCGCCTGCGTGAGGGCGGCTATGTTCC
CTTCGGCCCCTTTCTGGCGGGCGCCGGCTTTGCAGCCATGGTGTTCGGACCGCAGCAGATGCTGCAATCCCTATTGGCGG
CCTTGGGCCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-131)

• Type IV leader peptidase family (Peptidase_A24) (143-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.943	95.286	0.495
pilD	Vibrio campbellii strain DS40M4	46.758	98.653	0.461
pilD	Neisseria gonorrhoeae MS11	46.241	89.562	0.414
pilD	Acinetobacter nosocomialis M2	44.364	92.593	0.411
pilD	Acinetobacter baumannii D1279779	44	92.593	0.407