Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ACEUKD_RS04520 | Genome accession | NZ_CP169050 |
| Coordinates | 963983..964267 (+) | Length | 94 a.a. |
| NCBI ID | WP_031780151.1 | Uniprot ID | - |
| Organism | Vibrio diabolicus strain SF42 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 958983..969267
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEUKD_RS04510 (ACEUKD_04510) | - | 961424..961696 (+) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
| ACEUKD_RS04515 (ACEUKD_04515) | ppiD | 961898..963757 (+) | 1860 | WP_012842021.1 | peptidylprolyl isomerase | - |
| ACEUKD_RS04520 (ACEUKD_04520) | comEA | 963983..964267 (+) | 285 | WP_031780151.1 | ComEA family DNA-binding protein | Machinery gene |
| ACEUKD_RS04525 (ACEUKD_04525) | rrtA | 964366..964917 (-) | 552 | WP_047009480.1 | rhombosortase | - |
| ACEUKD_RS04530 (ACEUKD_04530) | - | 964921..965535 (+) | 615 | WP_114322553.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ACEUKD_RS04535 (ACEUKD_04535) | - | 965542..966864 (-) | 1323 | WP_258586672.1 | anti-phage deoxyguanosine triphosphatase | - |
| ACEUKD_RS04540 (ACEUKD_04540) | yfbR | 966880..967464 (-) | 585 | WP_047009477.1 | 5'-deoxynucleotidase | - |
| ACEUKD_RS04545 (ACEUKD_04545) | - | 967555..968769 (-) | 1215 | WP_005390543.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10322.94 Da Isoelectric Point: 5.1423
>NTDB_id=1049538 ACEUKD_RS04520 WP_031780151.1 963983..964267(+) (comEA) [Vibrio diabolicus strain SF42]
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=1049538 ACEUKD_RS04520 WP_031780151.1 963983..964267(+) (comEA) [Vibrio diabolicus strain SF42]
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCGCCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACCGTAAATATCAACACGGCCTCTGCTGAAGAAATAGCGACCATGTTGAAAGGTATTGGTGAGAAGA
AAGCGCAGAGTATCGTGGACTACCGCGAGGAGCATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCGCCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACCGTAAATATCAACACGGCCTCTGCTGAAGAAATAGCGACCATGTTGAAAGGTATTGGTGAGAAGA
AAGCGCAGAGTATCGTGGACTACCGCGAGGAGCATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
89.362 |
100 |
0.894 |
| comEA | Vibrio campbellii strain DS40M4 |
74.737 |
100 |
0.755 |
| comEA | Vibrio cholerae C6706 |
61.957 |
97.872 |
0.606 |
| comEA | Vibrio cholerae strain A1552 |
61.957 |
97.872 |
0.606 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
49.383 |
86.17 |
0.426 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
58.065 |
65.957 |
0.383 |
| comEA/celA/cilE | Streptococcus pneumoniae TIGR4 |
39.326 |
94.681 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.842 |
100 |
0.372 |
| comEA | Legionella pneumophila str. Paris |
36.842 |
100 |
0.372 |