Detailed information NTG1044792

Bioinformatically predicted

Overview

• Name: ssbB
• Type: Machinery gene
• Locus tag: ACCB35_RS21215
• Genome accession: NZ_CP168654
• Coordinates: 4250518..4250895 (-)
• Length: 125 a.a.
• NCBI ID: WP_044339964.1
• Uniprot ID: -
• Organism: Rossellomorea sp. FM04394
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	4245290..4259575	4250518..4250895	within	0

Gene organization within MGE regions

Location: 4245290..4259575

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACCB35_RS21200	-	4245290..4246933 (+)	1644	WP_374055212.1	SWIM zinc finger domain-containing protein	-
ACCB35_RS21205	-	4246926..4249751 (+)	2826	WP_374055213.1	DEAD/DEAH box helicase	-
ACCB35_RS21210	-	4250320..4250493 (-)	174	WP_374055214.1	hypothetical protein	-
ACCB35_RS21215	ssbB	4250518..4250895 (-)	378	WP_044339964.1	single-stranded DNA-binding protein	Machinery gene
ACCB35_RS21220	-	4251164..4251604 (+)	441	WP_044339965.1	YwpF-like family protein	-
ACCB35_RS21225	-	4251717..4252037 (+)	321	WP_374055215.1	helix-turn-helix domain-containing protein	-
ACCB35_RS21230	-	4252071..4252208 (-)	138	WP_374055216.1	anti-repressor SinI family protein	-
ACCB35_RS21235	-	4253012..4253332 (+)	321	WP_374055217.1	helix-turn-helix domain-containing protein	-
ACCB35_RS21240	-	4253423..4253719 (-)	297	WP_374055218.1	hypothetical protein	-
ACCB35_RS21245	fabZ	4253911..4254345 (-)	435	WP_044339970.1	3-hydroxyacyl-ACP dehydratase FabZ	-
ACCB35_RS21250	-	4254711..4254989 (-)	279	WP_374055219.1	DNA-directed RNA polymerase subunit beta	-
ACCB35_RS21255	-	4255005..4255847 (-)	843	WP_374055220.1	flagellar hook-basal body protein	-
ACCB35_RS21260	-	4255908..4256747 (-)	840	WP_374055221.1	flagellar hook-basal body protein	-
ACCB35_RS21265	-	4256818..4257828 (-)	1011	WP_374055222.1	rod shape-determining protein	-
ACCB35_RS21270	spoIIID	4258260..4258520 (-)	261	WP_032086905.1	sporulation transcriptional regulator SpoIIID	-
ACCB35_RS21275	-	4258916..4259512 (-)	597	WP_374055223.1	PolC-type DNA polymerase III	-

Sequence

Protein

• Length: 125 a.a.
• Molecular weight: 14347.32 Da
• Isoelectric Point: 9.6711

>NTDB_id=1044792 ACCB35_RS21215 WP_044339964.1 4250518..4250895(-) (ssbB) [Rossellomorea sp. FM04394]
MINQVTIVGRLTKDPETRKTMEGKSILNATIAVNRNYKNQKGQIDTDFVLCTIWNRAADNMEKYCRKGSVVGVTGRIQTR
YYENDQGKRTYVTEVVAENVRFMDSKREPVNASDPNKKEPIELPF

Nucleotide

• Length: 378 bp

>NTDB_id=1044792 ACCB35_RS21215 WP_044339964.1 4250518..4250895(-) (ssbB) [Rossellomorea sp. FM04394]
TTGATCAACCAAGTGACCATCGTTGGAAGGCTGACCAAGGACCCCGAAACAAGAAAAACAATGGAAGGAAAATCGATACT
TAACGCAACGATAGCTGTGAATCGCAACTACAAGAATCAAAAAGGCCAAATTGATACAGATTTTGTACTCTGCACCATTT
GGAACCGGGCAGCCGATAATATGGAGAAATATTGCCGAAAGGGATCTGTCGTTGGAGTGACCGGTCGCATACAAACTCGG
TATTATGAAAATGATCAGGGAAAGCGCACGTATGTAACGGAAGTCGTCGCTGAAAATGTCAGGTTTATGGACAGCAAACG
GGAGCCGGTAAATGCTTCCGACCCAAACAAAAAAGAGCCAATCGAATTACCGTTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.547	84.8	0.488
ssbB	Streptococcus sobrinus strain NIDR 6715-7	41.667	100	0.44
ssbA	Bacillus subtilis subsp. subtilis str. 168	51.887	84.8	0.44
ssb	Latilactobacillus sakei subsp. sakei 23K	48.113	84.8	0.408
ssbA	Streptococcus mutans UA159	36.364	100	0.384
ssbB/cilA	Streptococcus pneumoniae Rx1	43.396	84.8	0.368
ssbB/cilA	Streptococcus pneumoniae D39	43.396	84.8	0.368
ssbB/cilA	Streptococcus pneumoniae R6	43.396	84.8	0.368
ssbB/cilA	Streptococcus pneumoniae TIGR4	43.396	84.8	0.368
ssbB/cilA	Streptococcus mitis NCTC 12261	42.453	84.8	0.36
ssbB/cilA	Streptococcus mitis SK321	42.453	84.8	0.36