Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACCK33_RS09975 Genome accession   NZ_CP168442
Coordinates   2011483..2011911 (-) Length   142 a.a.
NCBI ID   WP_000934782.1    Uniprot ID   -
Organism   Staphylococcus aureus strain J03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2006483..2016911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCK33_RS09925 (ACCK33_09925) - 2006896..2007144 (-) 249 WP_001126832.1 phi PVL orf 51-like protein -
  ACCK33_RS09930 (ACCK33_09930) - 2007145..2007516 (-) 372 WP_001140278.1 SA1788 family PVL leukocidin-associated protein -
  ACCK33_RS09935 (ACCK33_09935) - 2007517..2007702 (-) 186 WP_001187244.1 DUF3113 family protein -
  ACCK33_RS09940 (ACCK33_09940) - 2007707..2008111 (-) 405 WP_000049804.1 DUF1064 domain-containing protein -
  ACCK33_RS09945 (ACCK33_09945) - 2008122..2008343 (-) 222 WP_001123679.1 DUF3269 family protein -
  ACCK33_RS09950 (ACCK33_09950) - 2008356..2008517 (-) 162 WP_000237153.1 hypothetical protein -
  ACCK33_RS09955 (ACCK33_09955) - 2008511..2009290 (-) 780 WP_000803056.1 ATP-binding protein -
  ACCK33_RS09960 (ACCK33_09960) - 2009301..2010044 (-) 744 WP_000139436.1 conserved phage C-terminal domain-containing protein -
  ACCK33_RS09965 (ACCK33_09965) - 2010037..2010801 (-) 765 WP_000240900.1 AP2 domain-containing protein -
  ACCK33_RS09970 (ACCK33_09970) - 2010801..2011469 (-) 669 WP_001121805.1 putative HNHc nuclease -
  ACCK33_RS09975 (ACCK33_09975) ssbA 2011483..2011911 (-) 429 WP_000934782.1 single-stranded DNA-binding protein Machinery gene
  ACCK33_RS09980 (ACCK33_09980) - 2011911..2012534 (-) 624 WP_000139720.1 DUF1071 domain-containing protein -
  ACCK33_RS09985 (ACCK33_09985) - 2012527..2012748 (-) 222 WP_001077280.1 DUF2483 family protein -
  ACCK33_RS09990 (ACCK33_09990) - 2012758..2013018 (-) 261 WP_000291090.1 DUF1108 family protein -
  ACCK33_RS09995 (ACCK33_09995) - 2013115..2013276 (-) 162 WP_000066011.1 DUF1270 domain-containing protein -
  ACCK33_RS10000 (ACCK33_10000) - 2013269..2013490 (-) 222 WP_000594789.1 hypothetical protein -
  ACCK33_RS10005 (ACCK33_10005) - 2013561..2013791 (+) 231 WP_000395457.1 hypothetical protein -
  ACCK33_RS10010 (ACCK33_10010) - 2013995..2014189 (-) 195 WP_000390105.1 hypothetical protein -
  ACCK33_RS10015 (ACCK33_10015) - 2014206..2014994 (-) 789 WP_001148566.1 phage antirepressor KilAC domain-containing protein -
  ACCK33_RS10020 (ACCK33_10020) - 2015010..2015228 (-) 219 WP_001198673.1 helix-turn-helix transcriptional regulator -
  ACCK33_RS10025 (ACCK33_10025) - 2015370..2016089 (+) 720 WP_000358224.1 XRE family transcriptional regulator -
  ACCK33_RS10030 (ACCK33_10030) - 2016159..2016326 (+) 168 WP_000705238.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15980.48 Da        Isoelectric Point: 5.8724

>NTDB_id=1044181 ACCK33_RS09975 WP_000934782.1 2011483..2011911(-) (ssbA) [Staphylococcus aureus strain J03]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVAADSVQFLEPKNSNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1044181 ACCK33_RS09975 WP_000934782.1 2011483..2011911(-) (ssbA) [Staphylococcus aureus strain J03]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGCAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAGCAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.711
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.657

100

0.43
  ssbA Streptococcus mutans UA159

41.549

100

0.415
  ssbB/cilA Streptococcus mitis NCTC 12261

40.845

100

0.408
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.845

100

0.408
  ssbB/cilA Streptococcus pneumoniae Rx1

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae D39

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae R6

40.141

100

0.401
  ssbB/cilA Streptococcus mitis SK321

40.141

100

0.401

Multiple sequence alignment