Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   QOR48_RS01100 Genome accession   NZ_OX460942
Coordinates   189629..190090 (+) Length   153 a.a.
NCBI ID   WP_001874060.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-158     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 184629..195090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR48_RS01075 - 186533..186898 (+) 366 WP_000285373.1 DUF1033 family protein -
  QOR48_RS01080 comGA 187071..188042 (+) 972 WP_000250808.1 competence type IV pilus ATPase ComGA Machinery gene
  QOR48_RS01085 comGB 187936..188979 (+) 1044 WP_223295592.1 competence type IV pilus assembly protein ComGB Machinery gene
  QOR48_RS01090 comGD 188976..189404 (+) 429 WP_000793381.1 competence type IV pilus minor pilin ComGD Machinery gene
  QOR48_RS01095 comGE 189376..189675 (+) 300 WP_001867089.1 competence type IV pilus minor pilin ComGE Machinery gene
  QOR48_RS01100 comGF 189629..190090 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF Machinery gene
  QOR48_RS01105 comGG 190068..190439 (+) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG Machinery gene
  QOR48_RS01110 comGH 190554..191528 (+) 975 WP_001008570.1 class I SAM-dependent methyltransferase Machinery gene
  QOR48_RS01115 - 191560..192753 (+) 1194 WP_000047535.1 acetate kinase -
  QOR48_RS01120 - 192904..193110 (+) 207 WP_000798242.1 helix-turn-helix transcriptional regulator -
  QOR48_RS01125 - 193169..193306 (+) 138 WP_001867090.1 hypothetical protein -
  QOR48_RS01130 - 193347..193802 (+) 456 WP_000905674.1 hypothetical protein -
  QOR48_RS01135 - 193871..194536 (+) 666 WP_000008111.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17861.86 Da        Isoelectric Point: 9.8392

>NTDB_id=1043733 QOR48_RS01100 WP_001874060.1 189629..190090(+) (comGF) [Streptococcus agalactiae isolate MRI Z2-158]
MKVIRKFCTYQKLRVKAFTLLECLVALVTITGALLVYQGLTKLLAQQIVVMSSSSQSEWVLLTQQLNAEFEGAHLEYLRQ
NKLYLRKQDKIVTFGKSNKDDFRKTGYDGRGYQPMVYGLDNCQMSQTKSMVKLVFYFKDGLKRTFYYDFKEET

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1043733 QOR48_RS01100 WP_001874060.1 189629..190090(+) (comGF) [Streptococcus agalactiae isolate MRI Z2-158]
TTGAAGGTAATAAGGAAATTTTGCACGTATCAAAAGTTAAGGGTTAAAGCATTTACGCTTTTAGAATGTTTGGTAGCATT
GGTTACAATCACAGGAGCTTTACTAGTTTATCAAGGACTGACAAAATTGTTGGCTCAACAGATAGTAGTGATGTCTTCTT
CCAGTCAGTCTGAATGGGTGTTATTAACTCAGCAACTAAATGCAGAATTCGAAGGCGCTCACTTGGAATATTTAAGACAG
AACAAACTTTATTTACGTAAGCAAGATAAGATTGTAACCTTTGGCAAATCTAATAAAGATGATTTCCGTAAGACAGGTTA
TGATGGTCGAGGTTATCAACCAATGGTTTATGGGTTAGACAATTGTCAAATGAGTCAAACCAAAAGTATGGTAAAACTTG
TTTTTTATTTTAAGGACGGGTTAAAAAGGACATTTTACTATGATTTTAAAGAAGAAACTTAA

Domains

Predicted by InterProScan.

Putative Competence protein ComGF (ComGF)

(49-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Streptococcus mutans UA159

47.887

92.81

0.444
  comGF Streptococcus mutans UA140

47.887

92.81

0.444
  comGF/cglF Streptococcus pneumoniae Rx1

43.165

90.85

0.392
  comGF/cglF Streptococcus pneumoniae D39

43.165

90.85

0.392
  comGF/cglF Streptococcus pneumoniae R6

43.165

90.85

0.392
  comGF/cglF Streptococcus pneumoniae TIGR4

43.165

90.85

0.392
  comGF/cglF Streptococcus mitis SK321

44.03

87.582

0.386
  comGF/cglF Streptococcus mitis NCTC 12261

43.284

87.582

0.379
  comGF Lactococcus lactis subsp. cremoris KW2

40.714

91.503

0.373

Multiple sequence alignment