Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACEN3H_RS16730 Genome accession   NZ_CP168231
Coordinates   3589926..3591152 (+) Length   408 a.a.
NCBI ID   WP_057104884.1    Uniprot ID   A0A429JZL9
Organism   Acinetobacter lactucae strain 2024CK-01095     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3584926..3596152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3H_RS16695 (ACEN3H_16695) rimP 3585596..3586120 (-) 525 WP_016144169.1 ribosome maturation factor RimP -
  ACEN3H_RS16715 (ACEN3H_16715) secG 3586758..3587087 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  ACEN3H_RS16720 (ACEN3H_16720) tpiA 3587100..3587894 (-) 795 WP_368678135.1 triose-phosphate isomerase -
  ACEN3H_RS16725 (ACEN3H_16725) pilB 3588186..3589898 (+) 1713 WP_373358131.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACEN3H_RS16730 (ACEN3H_16730) pilC 3589926..3591152 (+) 1227 WP_057104884.1 type II secretion system F family protein Machinery gene
  ACEN3H_RS16735 (ACEN3H_16735) pilD 3591152..3592012 (+) 861 WP_373358132.1 A24 family peptidase Machinery gene
  ACEN3H_RS16740 (ACEN3H_16740) coaE 3592014..3592610 (+) 597 WP_062849621.1 dephospho-CoA kinase -
  ACEN3H_RS16745 (ACEN3H_16745) - 3592607..3593521 (-) 915 WP_373358133.1 DMT family transporter -
  ACEN3H_RS16750 (ACEN3H_16750) rlmB 3593557..3594306 (-) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACEN3H_RS16755 (ACEN3H_16755) - 3594409..3594735 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  ACEN3H_RS16760 (ACEN3H_16760) - 3594812..3596122 (-) 1311 WP_057104888.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45054.52 Da        Isoelectric Point: 9.8960

>NTDB_id=1043332 ACEN3H_RS16730 WP_057104884.1 3589926..3591152(+) (pilC) [Acinetobacter lactucae strain 2024CK-01095]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAIIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1043332 ACEN3H_RS16730 WP_057104884.1 3589926..3591152(+) (pilC) [Acinetobacter lactucae strain 2024CK-01095]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGAGA
ACTTCCGGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGGGTAACTGTCCGTAATATTCGAGAAAAGC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAGAAAGTATCGACACTCGATATCACGATTTTCACCCGTCAACTTGCAACA
ATGATGAAAGCAGGGGTTCCACTGGTACAAGGCTTTGAAATTGTAGCGGAAGGCCTAGAAAACCCAGCCATGCGCGAGGT
AGTACTTGGTATTAAAGGCGAAGTTGAAGGTGGTAGTACTTTTGCTTCGGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGCGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAACAAAAAATCAAAAAAGCTATGAAATATCCCGCAACGGTTATTGTAGTTGCTGTGATTGT
TACCATTATTTTGATGGTTAAAGTCGTGCCAGTATTTCAAGACCTGTTTTCTTCTTTTGGCGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATCATTGTGATTGGAGCAATTATTGCT
GCATTTTTGGAAGCCAAAAAGCGTAGTAAAAAATTCCGTGATGGTTTAGATAAACTTACCCTGAAACTACCTATCTTTGG
TGATCTGGTTTACAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCAGGTGTTCCGCTTATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTTATTTATGAACAAGCAGTAATGAAAATTCGTGAAGATGTTGCT
ACAGGTCAACAACTCCAATTTGCAATGCGCGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTTGTAGGTGGGCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A429JZL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.304

100

0.973
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria meningitidis 44/76-A

45.98

97.549

0.449
  pilG Neisseria gonorrhoeae MS11

45.98

97.549

0.449
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

36.908

98.284

0.363

Multiple sequence alignment