Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACEN3N_RS01680 Genome accession   NZ_CP168228
Coordinates   363548..364774 (-) Length   408 a.a.
NCBI ID   WP_151961535.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain 2024CK-01176     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 358548..369774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3N_RS01655 (ACEN3N_01655) - 359824..360147 (+) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -
  ACEN3N_RS01660 (ACEN3N_01660) rlmB 360291..361043 (+) 753 WP_373350680.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACEN3N_RS01665 (ACEN3N_01665) - 361084..362004 (+) 921 WP_151961532.1 DMT family transporter -
  ACEN3N_RS01670 (ACEN3N_01670) coaE 362051..362650 (-) 600 WP_335990246.1 dephospho-CoA kinase -
  ACEN3N_RS01675 (ACEN3N_01675) pilD 362676..363548 (-) 873 WP_151961534.1 A24 family peptidase Machinery gene
  ACEN3N_RS01680 (ACEN3N_01680) pilC 363548..364774 (-) 1227 WP_151961535.1 type II secretion system F family protein Machinery gene
  ACEN3N_RS01685 (ACEN3N_01685) pilB 364802..366514 (-) 1713 WP_151961536.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACEN3N_RS01690 (ACEN3N_01690) tpiA 366793..367587 (+) 795 WP_151780909.1 triose-phosphate isomerase -
  ACEN3N_RS01695 (ACEN3N_01695) secG 367597..367938 (+) 342 WP_004826367.1 preprotein translocase subunit SecG -
  ACEN3N_RS01720 (ACEN3N_01720) rimP 368732..369256 (+) 525 WP_004826368.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45143.65 Da        Isoelectric Point: 9.9418

>NTDB_id=1043263 ACEN3N_RS01680 WP_151961535.1 363548..364774(-) (pilC) [Acinetobacter bereziniae strain 2024CK-01176]
MAAKKAQMMPTFAYDGVDRKGIKVKGELPARNMALAKVTLRKQGITIKTIREKKKNIFEGLMKKGISTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPSMREVVLGIKSEVEGGNTFAGALRKYPRYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPMTVIVVAIIVTVILMVKVVPVFQSLFSSFGAELPAFTQMVVNMSNWMQSYWFIMLIIIAVFIT
AFLEAKKRSQKFRDFLDRTALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIEALESTAGATNNIVYEQAVMKIREDVA
TGQQLNFAMRVSNKFPSMAIQMVAIGEESGALDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLVVAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1043263 ACEN3N_RS01680 WP_151961535.1 363548..364774(-) (pilC) [Acinetobacter bereziniae strain 2024CK-01176]
ATGGCAGCTAAAAAAGCGCAAATGATGCCTACCTTTGCTTATGACGGGGTTGATCGTAAAGGAATCAAGGTCAAAGGAGA
ATTGCCTGCACGGAATATGGCACTTGCCAAAGTCACGTTGAGAAAGCAAGGCATTACCATTAAAACCATTCGAGAAAAAA
AGAAAAATATCTTTGAAGGTTTAATGAAAAAAGGAATATCAACTTTAGATATTACCATTTTTACCCGTCAGCTTGCCACC
ATGATGAAAGCGGGTGTGCCTTTGGTGCAAAGTTTTGAAATTGTTGCCGAAGGTTTAGAAAACCCTTCTATGCGAGAAGT
TGTTTTAGGAATCAAAAGTGAAGTTGAAGGCGGAAATACTTTTGCTGGGGCACTAAGAAAATACCCCCGCTACTTTGATA
ACTTGTTTTGTTCCTTGGTCGAGTCAGGAGAGCAATCAGGTGCTTTAGAGACTATGCTAGATCGTGTTGCGATCTATAAA
GAAAAAAGCGAATTATTAAAGCAAAAAATTAAAAAAGCCATGAAATATCCTATGACGGTGATTGTAGTTGCTATCATCGT
CACTGTTATCCTTATGGTCAAAGTTGTACCTGTCTTTCAAAGCTTATTTAGCTCTTTTGGTGCTGAGCTTCCAGCTTTTA
CCCAAATGGTCGTAAACATGTCCAACTGGATGCAGAGTTACTGGTTTATCATGCTTATAATCATAGCAGTTTTTATTACA
GCATTTTTGGAAGCAAAAAAACGCAGTCAAAAATTTCGCGACTTTTTAGACCGAACTGCACTCAAATTACCCATTTTTGG
CGATTTGGTCTATAAAGCCATTATTGCCCGTTATAGTCGCACCCTTGCAACCACTTTTGCTGCAGGGGTCCCCCTCATCG
AAGCACTAGAATCTACTGCGGGTGCAACCAACAACATTGTGTATGAACAAGCCGTGATGAAAATTCGTGAAGATGTCGCT
ACAGGTCAACAACTAAATTTTGCCATGCGTGTTAGTAATAAGTTCCCATCAATGGCTATTCAAATGGTCGCCATCGGCGA
GGAATCAGGGGCATTAGATGCAATGCTCGATAAAGTCGCCACACATTTTGAAAATGAAGTCGACAATGCTGTTGACGGTT
TAACCTCAATGATGGAACCCTTAATTATGGCAATCTTAGGCGTCTTGGTTGGCGGACTTGTTGTTGCTATGTATCTTCCA
ATTTTCCAGATGGGTTCCGTAATTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

87.255

100

0.873
  pilC Acinetobacter baylyi ADP1

83.824

100

0.838
  pilC Pseudomonas stutzeri DSM 10701

59.606

99.51

0.593
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria gonorrhoeae MS11

46.734

97.549

0.456
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

42.998

99.755

0.429
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

37.905

98.284

0.373

Multiple sequence alignment