Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACEN3N_RS01675 Genome accession   NZ_CP168228
Coordinates   362676..363548 (-) Length   290 a.a.
NCBI ID   WP_151961534.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain 2024CK-01176     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 357676..368548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3N_RS01655 (ACEN3N_01655) - 359824..360147 (+) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -
  ACEN3N_RS01660 (ACEN3N_01660) rlmB 360291..361043 (+) 753 WP_373350680.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACEN3N_RS01665 (ACEN3N_01665) - 361084..362004 (+) 921 WP_151961532.1 DMT family transporter -
  ACEN3N_RS01670 (ACEN3N_01670) coaE 362051..362650 (-) 600 WP_335990246.1 dephospho-CoA kinase -
  ACEN3N_RS01675 (ACEN3N_01675) pilD 362676..363548 (-) 873 WP_151961534.1 A24 family peptidase Machinery gene
  ACEN3N_RS01680 (ACEN3N_01680) pilC 363548..364774 (-) 1227 WP_151961535.1 type II secretion system F family protein Machinery gene
  ACEN3N_RS01685 (ACEN3N_01685) pilB 364802..366514 (-) 1713 WP_151961536.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACEN3N_RS01690 (ACEN3N_01690) tpiA 366793..367587 (+) 795 WP_151780909.1 triose-phosphate isomerase -
  ACEN3N_RS01695 (ACEN3N_01695) secG 367597..367938 (+) 342 WP_004826367.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32257.72 Da        Isoelectric Point: 7.4293

>NTDB_id=1043262 ACEN3N_RS01675 WP_151961534.1 362676..363548(-) (pilD) [Acinetobacter bereziniae strain 2024CK-01176]
MQALLNFLIQSPTALFIVVGLVSLCVGSFLNVVIYRTPKMMEKEWRQEWQAECQLLAGSQQIVIDEEKLSLSQPASTCPQ
CKTPILWHQNIPVISWLALRGKCASCQNPISIRYPLVELLTAICSLTVVAVYGPTLQMVFGVLLTWVLIILTFIDFDTQL
LPDRFTLTLAAVGLGINSFEIYTTANAAIWGYIIGFLCLWIVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPLIIL
LSSVVGAIIGIILLKIRKENIPFAFGPYIAIAGWIAFLWGEQIMKIYLGQ

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1043262 ACEN3N_RS01675 WP_151961534.1 362676..363548(-) (pilD) [Acinetobacter bereziniae strain 2024CK-01176]
ATGCAAGCACTTCTAAATTTTCTAATTCAATCACCGACCGCACTTTTTATTGTTGTCGGTCTAGTTAGCCTGTGTGTGGG
GAGTTTCCTCAATGTGGTGATTTATCGCACACCAAAGATGATGGAAAAGGAATGGCGCCAAGAGTGGCAGGCAGAATGTC
AATTGCTTGCGGGTTCTCAACAGATTGTCATTGACGAAGAAAAGCTCAGTCTGAGTCAACCTGCGTCAACCTGTCCACAA
TGTAAAACACCGATTCTCTGGCATCAAAATATACCCGTGATCAGTTGGTTGGCGTTACGTGGTAAATGTGCTTCATGTCA
AAACCCCATCAGTATCCGTTATCCTTTGGTTGAACTACTGACAGCAATCTGCTCCTTAACCGTTGTTGCAGTATATGGAC
CAACACTGCAAATGGTATTTGGTGTATTGCTGACATGGGTGCTGATTATCCTGACCTTTATTGATTTTGATACACAATTA
TTACCTGATCGTTTTACCCTAACACTCGCGGCTGTGGGTTTAGGAATTAACTCATTTGAAATATATACCACAGCAAATGC
TGCAATTTGGGGTTATATTATTGGTTTTCTTTGCCTGTGGATTGTCTATTACCTGTTTAAAATCGTGACAGGTAAGGAAG
GTATGGGCTATGGTGACTTTAAGCTTCTTGCTGCACTAGGTGCTTGGATGGGACCGTTGATGCTACCCTTGATTATCCTA
CTTTCTTCGGTTGTCGGGGCAATTATTGGTATCATCCTGCTAAAAATTCGTAAGGAAAATATTCCTTTTGCTTTTGGACC
CTATATCGCCATTGCAGGTTGGATTGCATTCTTATGGGGCGAACAAATCATGAAGATTTACTTAGGTCAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(143-251)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

75.433

99.655

0.752
  pilD Acinetobacter nosocomialis M2

75.433

99.655

0.752
  pilD Vibrio campbellii strain DS40M4

54.317

95.862

0.521
  pilD Vibrio cholerae strain A1552

53.261

95.172

0.507
  pilD Neisseria gonorrhoeae MS11

44.238

92.759

0.41

Multiple sequence alignment