Detailed information NTG1043097

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACEL84_RS02605
• Genome accession: NZ_CP168212
• Coordinates: 550978..551988 (+)
• Length: 336 a.a.
• NCBI ID: WP_261894834.1
• Uniprot ID: -
• Organism: Vibrio porteresiae strain MSSRF31
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 545978..556988

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEL84_RS02570 (ACEL84_02570)	ftsB	546088..546369 (+)	282	WP_261894823.1	cell division protein FtsB	-
ACEL84_RS02575 (ACEL84_02575)	ispD	546369..547070 (+)	702	WP_261894825.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACEL84_RS02580 (ACEL84_02580)	ispF	547067..547543 (+)	477	WP_261894827.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACEL84_RS02585 (ACEL84_02585)	truD	547563..548609 (+)	1047	WP_261894829.1	tRNA pseudouridine(13) synthase TruD	-
ACEL84_RS02590 (ACEL84_02590)	surE	548617..549357 (+)	741	WP_373332813.1	5'/3'-nucleotidase SurE	-
ACEL84_RS02595 (ACEL84_02595)	-	549362..549988 (+)	627	WP_261894833.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACEL84_RS02600 (ACEL84_02600)	-	549988..550902 (+)	915	WP_373332801.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACEL84_RS02605 (ACEL84_02605)	rpoS	550978..551988 (+)	1011	WP_261894834.1	RNA polymerase sigma factor RpoS	Regulator
ACEL84_RS02610 (ACEL84_02610)	mutS	552054..554618 (-)	2565	WP_261894835.1	DNA mismatch repair protein MutS	-
ACEL84_RS02615 (ACEL84_02615)	pncC	554703..555188 (+)	486	WP_261894836.1	nicotinamide-nucleotide amidase	-
ACEL84_RS02620 (ACEL84_02620)	recA	555345..556412 (+)	1068	WP_261894837.1	recombinase RecA	Machinery gene
ACEL84_RS02625 (ACEL84_02625)	recX	556476..556940 (+)	465	WP_261894838.1	recombination regulator RecX	-

Sequence

Protein

• Length: 336 a.a.
• Molecular weight: 38671.51 Da
• Isoelectric Point: 4.3563

>NTDB_id=1043097 ACEL84_RS02605 WP_261894834.1 550978..551988(+) (rpoS) [Vibrio porteresiae strain MSSRF31]
MSISNTATKVEEFEFDHDVIDSIEVDEELTATSEEDTNDTDSSDDIREEFDVSSKSLDATQMYLSEIGFSPLLTAEEEVL
YARRALRGCEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAL
MNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTAEEIAFELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDII
PDANNSDPEVSTQDDDIRDSLMNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILM
KQGLSMESLFNVEVEM

Nucleotide

• Length: 1011 bp

>NTDB_id=1043097 ACEL84_RS02605 WP_261894834.1 550978..551988(+) (rpoS) [Vibrio porteresiae strain MSSRF31]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGAATTTGATCATGATGTAATCGATTCCATCGAGGTTGATGA
AGAACTAACGGCAACTAGTGAAGAAGACACTAATGACACGGACAGCAGTGACGATATTCGCGAAGAGTTTGATGTTTCGT
CTAAGAGTTTAGATGCAACACAGATGTATTTGAGCGAAATAGGTTTTTCGCCTTTGTTGACCGCCGAAGAAGAAGTTCTC
TATGCACGCCGCGCTCTGCGTGGTTGTGAAGCCGCAAGAAAACGTATGATCGAAAGTAACTTACGTTTGGTGGTAAAAAT
CTCTCGTCGATATAGCAATCGTGGCCTAGCTCTTCTCGATTTGATAGAAGAAGGCAACCTAGGTTTGATTCGTGCCGTTG
AGAAATTTGACCCAGAACGCGGATTCCGTTTTTCCACTTACGCAACATGGTGGATTCGTCAAACGATTGAACGTGCTTTG
ATGAACCAAACACGTACCATTCGTCTGCCAATTCATGTTGTGAAAGAACTCAATATTTATCTGCGTACTGCACGTGAATT
GTCCCAACGTTTAGACCATGAACCTACAGCAGAAGAGATCGCGTTTGAGCTTGATAAACCGGTTGATGATGTGAGCAAGA
TGCTACGTTTGAATGAACGTATCAGCTCTGTTGACACACCAATTGGTGGAGATGGAGATAAAGCGCTACTGGATATTATT
CCAGATGCGAATAACTCTGACCCAGAGGTTTCAACTCAAGATGATGATATCCGTGATTCTCTGATGAATTGGTTAGATGA
ACTGAATCCAAAACAGAAAGAGGTGTTAGCGCGTCGTTTCGGCCTTCTAGGTTACGAACCATCCACTCTTGAAGAGGTGG
GACGTGAAATTAATCTTACCCGTGAACGTGTTCGTCAAATTCAAGTGGAAGGATTACGCCGTCTAAGAGAGATCCTGATG
AAACAAGGTCTCAGTATGGAATCTCTGTTCAACGTTGAAGTCGAAATGTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (96-165)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (58-88)

• Sigma-70, region 4 (Sigma70_r4) (264-317)

• Sigma-70 region 3 (Sigma70_r3) (176-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.387	99.107	0.866